Literature DB >> 31199001

Phase separation in biology and disease-a symposium report.

Jennifer Cable1, Clifford Brangwynne2, Geraldine Seydoux3, David Cowburn4, Rohit V Pappu5, Carlos A Castañeda6, Luke E Berchowitz7, Zhijuan Chen8, Martin Jonikas9, Abby Dernburg10, Tanja Mittag11, Nicolas L Fawzi12.   

Abstract

Phase separation of multivalent protein and RNA molecules enables cells the formation of reversible nonstoichiometric, membraneless assemblies. These assemblies, referred to as biomolecular condensates, help with the spatial organization and compartmentalization of cellular matter. Each biomolecular condensate is defined by a distinct macromolecular composition. Distinct condensates have distinct preferential locations within cells, and they are associated with distinct biological functions, including DNA replication, RNA metabolism, signal transduction, synaptic transmission, and stress response. Several proteins found in biomolecular condensates have also been implicated in disease, including Huntington's disease, amyotrophic lateral sclerosis, and several types of cancer. Disease-associated mutations in these proteins have been found to affect the material properties of condensates as well as the driving forces for phase separation. Understanding the intrinsic and extrinsic forces driving the formation and dissolution of biomolecular condensates via spontaneous and driven phase separation is an important step in understanding the processes associated with biological regulation in health and disease.
© 2019 New York Academy of Sciences.

Entities:  

Keywords:  biomolecular condensates; granules; membraneless organelles; phase diagram; phase separation; protein disorder

Mesh:

Substances:

Year:  2019        PMID: 31199001      PMCID: PMC6751006          DOI: 10.1111/nyas.14126

Source DB:  PubMed          Journal:  Ann N Y Acad Sci        ISSN: 0077-8923            Impact factor:   5.691


  35 in total

1.  Profilin binds proline-rich ligands in two distinct amide backbone orientations.

Authors:  N M Mahoney; D A Rozwarski; E Fedorov; A A Fedorov; S C Almo
Journal:  Nat Struct Biol       Date:  1999-07

2.  Slide-and-exchange mechanism for rapid and selective transport through the nuclear pore complex.

Authors:  Barak Raveh; Jerome M Karp; Samuel Sparks; Kaushik Dutta; Michael P Rout; Andrej Sali; David Cowburn
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-18       Impact factor: 11.205

3.  Sequestration and inhibition of Daxx-mediated transcriptional repression by PML.

Authors:  H Li; C Leo; J Zhu; X Wu; J O'Neil; E J Park; J D Chen
Journal:  Mol Cell Biol       Date:  2000-03       Impact factor: 4.272

4.  Cyclic GMP-AMP synthase is a cytosolic DNA sensor that activates the type I interferon pathway.

Authors:  Lijun Sun; Jiaxi Wu; Fenghe Du; Xiang Chen; Zhijian J Chen
Journal:  Science       Date:  2012-12-20       Impact factor: 47.728

5.  Phosphorylation of profilin by ROCK1 regulates polyglutamine aggregation.

Authors:  Jieya Shao; William J Welch; Nicholas A Diprospero; Marc I Diamond
Journal:  Mol Cell Biol       Date:  2008-06-23       Impact factor: 4.272

6.  ROCK and PRK-2 mediate the inhibitory effect of Y-27632 on polyglutamine aggregation.

Authors:  Jieya Shao; William J Welch; Marc I Diamond
Journal:  FEBS Lett       Date:  2008-04-16       Impact factor: 4.124

7.  Residue-by-Residue View of In Vitro FUS Granules that Bind the C-Terminal Domain of RNA Polymerase II.

Authors:  Kathleen A Burke; Abigail M Janke; Christy L Rhine; Nicolas L Fawzi
Journal:  Mol Cell       Date:  2015-10-08       Impact factor: 17.970

8.  The presence of a crystalline matrix in pyrenoids of the diatom, Achnanthes brevipes.

Authors:  R H Holdsworth
Journal:  J Cell Biol       Date:  1968-06       Impact factor: 10.539

9.  The molecular mechanism of nuclear transport revealed by atomic-scale measurements.

Authors:  Loren E Hough; Kaushik Dutta; Samuel Sparks; Deniz B Temel; Alia Kamal; Jaclyn Tetenbaum-Novatt; Michael P Rout; David Cowburn
Journal:  Elife       Date:  2015-09-15       Impact factor: 8.140

10.  Introducing an algal carbon-concentrating mechanism into higher plants: location and incorporation of key components.

Authors:  Nicky Atkinson; Doreen Feike; Luke C M Mackinder; Moritz T Meyer; Howard Griffiths; Martin C Jonikas; Alison M Smith; Alistair J McCormick
Journal:  Plant Biotechnol J       Date:  2015-11-05       Impact factor: 9.803

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  4 in total

Review 1.  Evidence for and against Liquid-Liquid Phase Separation in the Nucleus.

Authors:  Peng A; Stephanie C Weber
Journal:  Noncoding RNA       Date:  2019-11-01

Review 2.  The Dynamic Regulation of mRNA Translation and Ribosome Biogenesis During Germ Cell Development and Reproductive Aging.

Authors:  Marianne Mercer; Seoyeon Jang; Chunyang Ni; Michael Buszczak
Journal:  Front Cell Dev Biol       Date:  2021-11-03

Review 3.  Liquid-liquid phase separation in tumor biology.

Authors:  Xuhui Tong; Rong Tang; Jin Xu; Wei Wang; Yingjun Zhao; Xianjun Yu; Si Shi
Journal:  Signal Transduct Target Ther       Date:  2022-07-08

Review 4.  Micellization: A new principle in the formation of biomolecular condensates.

Authors:  Tomohiro Yamazaki; Tetsuya Yamamoto; Tetsuro Hirose
Journal:  Front Mol Biosci       Date:  2022-08-29
  4 in total

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