Literature DB >> 30908980

Dynamic chromatin organization without the 30-nm fiber.

Kazuhiro Maeshima1, Satoru Ide2, Michael Babokhov3.   

Abstract

Chromatin in eukaryotic cells is a negatively charged polymer composed of DNA, histones, and various associated proteins. Over the past ten years, our view of chromatin has shifted from a static regular structure to a dynamic and highly variable configuration. While the details are not fully understood yet, chromatin forms numerous compact domains that act as dynamic functional units of the genome in higher eukaryotes. By altering DNA accessibility, the dynamic nature of chromatin governs various genome functions including RNA transcription, DNA replication, and DNA repair/recombination. Based on the new evidence coming from both genomics and imaging studies, we discuss the structural and dynamic aspects of chromatin and their biological relevance in the living cell.
Copyright © 2019 The Authors. Published by Elsevier Ltd.. All rights reserved.

Entities:  

Year:  2019        PMID: 30908980     DOI: 10.1016/j.ceb.2019.02.003

Source DB:  PubMed          Journal:  Curr Opin Cell Biol        ISSN: 0955-0674            Impact factor:   8.382


  31 in total

Review 1.  Heterogeneous fluid-like movements of chromatin and their implications to transcription.

Authors:  S S Ashwin; Kazuhiro Maeshima; Masaki Sasai
Journal:  Biophys Rev       Date:  2020-03-23

2.  Chromosome disentanglement driven via optimal compaction of loop-extruded brush structures.

Authors:  Sumitabha Brahmachari; John F Marko
Journal:  Proc Natl Acad Sci U S A       Date:  2019-11-22       Impact factor: 11.205

Review 3.  Beads on a string-nucleosome array arrangements and folding of the chromatin fiber.

Authors:  Sandro Baldi; Philipp Korber; Peter B Becker
Journal:  Nat Struct Mol Biol       Date:  2020-02-10       Impact factor: 15.369

4.  Differences in nanoscale organization of regulatory active and inactive human chromatin.

Authors:  Katharina Brandstetter; Tilo Zülske; Tobias Ragoczy; David Hörl; Miguel Guirao-Ortiz; Clemens Steinek; Toby Barnes; Gabriela Stumberger; Jonathan Schwach; Eric Haugen; Eric Rynes; Philipp Korber; John A Stamatoyannopoulos; Heinrich Leonhardt; Gero Wedemann; Hartmann Harz
Journal:  Biophys J       Date:  2022-02-10       Impact factor: 4.033

5.  Local chromatin fiber folding represses transcription and loop extrusion in quiescent cells.

Authors:  Sarah G Swygert; Dejun Lin; Stephanie Portillo-Ledesma; Po-Yen Lin; Dakota R Hunt; Cheng-Fu Kao; Tamar Schlick; William S Noble; Toshio Tsukiyama
Journal:  Elife       Date:  2021-11-04       Impact factor: 8.140

6.  Analysis of three-dimensional chromatin packing domains by chromatin scanning transmission electron microscopy (ChromSTEM).

Authors:  Yue Li; Vasundhara Agrawal; Ranya K A Virk; Eric Roth; Wing Shun Li; Adam Eshein; Jane Frederick; Kai Huang; Luay Almassalha; Reiner Bleher; Marcelo A Carignano; Igal Szleifer; Vinayak P Dravid; Vadim Backman
Journal:  Sci Rep       Date:  2022-07-16       Impact factor: 4.996

Review 7.  The Self-Organizing Genome: Principles of Genome Architecture and Function.

Authors:  Tom Misteli
Journal:  Cell       Date:  2020-09-24       Impact factor: 41.582

8.  Modelling and DNA topology of compact 2-start and 1-start chromatin fibres.

Authors:  Chenyi Wu; Andrew Travers
Journal:  Nucleic Acids Res       Date:  2019-10-10       Impact factor: 16.971

Review 9.  Collaboration through chromatin: motors of transcription and chromatin structure.

Authors:  Nathan Gamarra; Geeta J Narlikar
Journal:  J Mol Biol       Date:  2021-02-05       Impact factor: 6.151

10.  Multiscale modeling of genome organization with maximum entropy optimization.

Authors:  Xingcheng Lin; Yifeng Qi; Andrew P Latham; Bin Zhang
Journal:  J Chem Phys       Date:  2021-07-07       Impact factor: 3.488

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