Literature DB >> 30901546

Gene-Environment Interaction in the Era of Precision Medicine.

Jingjing Li1, Xiao Li2, Sai Zhang2, Michael Snyder3.   

Abstract

Innovative analytical frameworks are required to capture the complex gene-environment interactions. We investigate the insufficiency of commonly used models for disease genome analysis and suggest considering genetic interactions in complex diseases. For non-genetic factors, we study the emerging wearable technologies that have enabled quantification of physiological and environmental factors at an unprecedented breadth and depth. We propose a Bayesian framework to hierarchically model personalized gene-environmental interaction to enable precision health and medicine.
Copyright © 2019 Elsevier Inc. All rights reserved.

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Year:  2019        PMID: 30901546      PMCID: PMC8108774          DOI: 10.1016/j.cell.2019.03.004

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  15 in total

1.  Decoding the Genomics of Abdominal Aortic Aneurysm.

Authors:  Jingjing Li; Cuiping Pan; Sai Zhang; Joshua M Spin; Alicia Deng; Lawrence L K Leung; Ronald L Dalman; Philip S Tsao; Michael Snyder
Journal:  Cell       Date:  2018-09-06       Impact factor: 41.582

Review 2.  An Expanded View of Complex Traits: From Polygenic to Omnigenic.

Authors:  Evan A Boyle; Yang I Li; Jonathan K Pritchard
Journal:  Cell       Date:  2017-06-15       Impact factor: 41.582

3.  Rare de novo variants associated with autism implicate a large functional network of genes involved in formation and function of synapses.

Authors:  Sarah R Gilman; Ivan Iossifov; Dan Levy; Michael Ronemus; Michael Wigler; Dennis Vitkup
Journal:  Neuron       Date:  2011-06-09       Impact factor: 17.173

Review 4.  Cognitive Dysfunctions in Intellectual Disabilities: The Contributions of the Ras-MAPK and PI3K-AKT-mTOR Pathways.

Authors:  Sarah C Borrie; Hilde Brems; Eric Legius; Claudia Bagni
Journal:  Annu Rev Genomics Hum Genet       Date:  2017-08-31       Impact factor: 8.929

Review 5.  Finding the missing heritability of complex diseases.

Authors:  Teri A Manolio; Francis S Collins; Nancy J Cox; David B Goldstein; Lucia A Hindorff; David J Hunter; Mark I McCarthy; Erin M Ramos; Lon R Cardon; Aravinda Chakravarti; Judy H Cho; Alan E Guttmacher; Augustine Kong; Leonid Kruglyak; Elaine Mardis; Charles N Rotimi; Montgomery Slatkin; David Valle; Alice S Whittemore; Michael Boehnke; Andrew G Clark; Evan E Eichler; Greg Gibson; Jonathan L Haines; Trudy F C Mackay; Steven A McCarroll; Peter M Visscher
Journal:  Nature       Date:  2009-10-08       Impact factor: 49.962

6.  Digital Health: Tracking Physiomes and Activity Using Wearable Biosensors Reveals Useful Health-Related Information.

Authors:  Xiao Li; Jessilyn Dunn; Denis Salins; Gao Zhou; Wenyu Zhou; Sophia Miryam Schüssler-Fiorenza Rose; Dalia Perelman; Elizabeth Colbert; Ryan Runge; Shannon Rego; Ria Sonecha; Somalee Datta; Tracey McLaughlin; Michael P Snyder
Journal:  PLoS Biol       Date:  2017-01-12       Impact factor: 8.029

7.  Identification of mutations in the PI3K-AKT-mTOR signalling pathway in patients with macrocephaly and developmental delay and/or autism.

Authors:  Kit San Yeung; Winnie Wan Yee Tso; Janice Jing Kun Ip; Christopher Chun Yu Mak; Gordon Ka Chun Leung; Mandy Ho Yin Tsang; Dingge Ying; Steven Lim Cho Pei; So Lun Lee; Wanling Yang; Brian Hon-Yin Chung
Journal:  Mol Autism       Date:  2017-12-20       Impact factor: 7.509

8.  Mapping the Genetic Landscape of Human Cells.

Authors:  Max A Horlbeck; Albert Xu; Min Wang; Neal K Bennett; Chong Y Park; Derek Bogdanoff; Britt Adamson; Eric D Chow; Martin Kampmann; Tim R Peterson; Ken Nakamura; Michael A Fischbach; Jonathan S Weissman; Luke A Gilbert
Journal:  Cell       Date:  2018-07-19       Impact factor: 41.582

9.  Dynamic Human Environmental Exposome Revealed by Longitudinal Personal Monitoring.

Authors:  Chao Jiang; Xin Wang; Xiyan Li; Jingga Inlora; Ting Wang; Qing Liu; Michael Snyder
Journal:  Cell       Date:  2018-09-20       Impact factor: 41.582

10.  Role of duplicate genes in robustness against deleterious human mutations.

Authors:  Tzu-Lin Hsiao; Dennis Vitkup
Journal:  PLoS Genet       Date:  2008-03-14       Impact factor: 5.917

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  21 in total

1.  The Variations of Metabolic Detoxification Enzymes Lead to Recurrent Miscarriage and Their Diagnosis Strategy.

Authors:  Chunlan Song; Wei Shang
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

Review 2.  Appraisal of Gene-Environment Interactions in GWAS for Evidence-Based Precision Nutrition Implementation.

Authors:  Rodrigo San-Cristobal; Juan de Toro-Martín; Marie-Claude Vohl
Journal:  Curr Nutr Rep       Date:  2022-08-11

Review 3.  Open problems in human trait genetics.

Authors:  Nadav Brandes; Omer Weissbrod; Michal Linial
Journal:  Genome Biol       Date:  2022-06-20       Impact factor: 17.906

Review 4.  Parental overnutrition by carbohydrates in developmental origins of metabolic syndrome.

Authors:  O Šeda
Journal:  Physiol Res       Date:  2021-12-30       Impact factor: 2.139

Review 5.  Gene-Environment Interactions for Cardiovascular Disease.

Authors:  Jaana A Hartiala; James R Hilser; Subarna Biswas; Aldons J Lusis; Hooman Allayee
Journal:  Curr Atheroscler Rep       Date:  2021-10-14       Impact factor: 5.967

Review 6.  Opportunities for Gene and Environment Research in Cancer: An Updated Review of NCI's Extramural Grant Portfolio.

Authors:  Armen A Ghazarian; Naoko Ishibe Simonds; Gabriel Y Lai; Leah E Mechanic
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2020-12-15       Impact factor: 4.090

7.  Genome-wide identification of the genetic basis of amyotrophic lateral sclerosis.

Authors:  Sai Zhang; Johnathan Cooper-Knock; Annika K Weimer; Minyi Shi; Tobias Moll; Jack N G Marshall; Calum Harvey; Helia Ghahremani Nezhad; John Franklin; Cleide Dos Santos Souza; Ke Ning; Cheng Wang; Jingjing Li; Allison A Dilliott; Sali Farhan; Eran Elhaik; Iris Pasniceanu; Matthew R Livesey; Chen Eitan; Eran Hornstein; Kevin P Kenna; Jan H Veldink; Laura Ferraiuolo; Pamela J Shaw; Michael P Snyder
Journal:  Neuron       Date:  2022-01-18       Impact factor: 18.688

8.  Towards precision medicine in diabetes? A critical review of glucotypes.

Authors:  Adam Hulman; Yuri D Foreman; Martijn C G J Brouwers; Abraham A Kroon; Koen D Reesink; Pieter C Dagnelie; Carla J H van der Kallen; Marleen M J van Greevenbroek; Kristine Færch; Dorte Vistisen; Marit E Jørgensen; Coen D A Stehouwer; Daniel R Witte
Journal:  PLoS Biol       Date:  2021-03-11       Impact factor: 8.029

9.  Genetic Variants and Protein Alterations of Selenium- and T-2 Toxin-Responsive Genes Are Associated With Chondrocytic Damage in Endemic Osteoarthropathy.

Authors:  Yujie Ning; Minhan Hu; Jiayu Diao; Yi Gong; Ruitian Huang; Sijie Chen; Feiyu Zhang; Yanli Liu; Feihong Chen; Pan Zhang; Guanghui Zhao; Yanhai Chang; Ke Xu; Rong Zhou; Cheng Li; Feng Zhang; Mikko Lammi; Xi Wang; Xiong Guo
Journal:  Front Genet       Date:  2022-01-11       Impact factor: 4.599

Review 10.  Multi-pronged research on endemic chronic kidney disease of unknown etiology in Sri Lanka: a systematic review.

Authors:  Dinushi Arambegedara; Saroj Jayasinghe; Preethi Udagama
Journal:  Environ Sci Pollut Res Int       Date:  2021-11-19       Impact factor: 5.190

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