| Literature DB >> 35087566 |
Yujie Ning1, Minhan Hu1, Jiayu Diao2, Yi Gong1, Ruitian Huang1, Sijie Chen1, Feiyu Zhang1, Yanli Liu1, Feihong Chen1, Pan Zhang1, Guanghui Zhao3, Yanhai Chang2, Ke Xu3, Rong Zhou1,4, Cheng Li1,4, Feng Zhang1, Mikko Lammi1,5, Xi Wang1, Xiong Guo1.
Abstract
The mechanism of environmental factors in Kashin-Beck disease (KBD) remains unknown. We aimed to identify single nucleotide polymorphisms (SNPs) and protein alterations of selenium- and T-2 toxin-responsive genes to provide new evidence of chondrocytic damage in KBD. This study sampled the cubital venous blood of 258 subjects including 129 sex-matched KBD patients and 129 healthy controls for SNP detection. We applied an additive model, a dominant model, and a recessive model to identify significant SNPs. We then used the Comparative Toxicogenomics Database (CTD) to select selenium- and T-2 toxin-responsive genes with the candidate SNP loci. Finally, immunohistochemistry was applied to verify the protein expression of candidate genes in knee cartilage obtained from 15 subjects including 5 KBD, 5 osteoarthritis (OA), and 5 healthy controls. Forty-nine SNPs were genotyped in the current study. The C allele of rs6494629 was less frequent in KBD than in the controls (OR = 0.63, p = 0.011). Based on the CTD database, PPARG, ADAM12, IL6, SMAD3, and TIMP2 were identified to interact with selenium, sodium selenite, and T-2 toxin. KBD was found to be significantly associated with rs12629751 of PPARG (additive model: OR = 0.46, p = 0.012; dominant model: OR = 0.45, p = 0.049; recessive model: OR = 0.18, p = 0.018), rs1871054 of ADAM12 (dominant model: OR = 2.19, p = 0.022), rs1800796 of IL6 (dominant model: OR = 0.30, p = 0.003), rs6494629 of SMAD3 (additive model: OR = 0.65, p = 0.019; dominant model: OR = 0.52, p = 0.012), and rs4789936 of TIMP2 (recessive model: OR = 5.90, p = 0.024). Immunohistochemistry verified significantly upregulated PPARG, ADAM12, SMAD3, and TIMP2 in KBD compared with OA and normal controls (p < 0.05). Genetic polymorphisms of PPARG, ADAM12, SMAD3, and TIMP2 may contribute to the risk of KBD. These genes could promote the pathogenesis of KBD by disturbing ECM homeostasis.Entities:
Keywords: Kashin–Beck disease; T-2 toxin; chondrocyte damage; selenium; single nucleotide polymorphism
Year: 2022 PMID: 35087566 PMCID: PMC8787141 DOI: 10.3389/fgene.2021.773534
Source DB: PubMed Journal: Front Genet ISSN: 1664-8021 Impact factor: 4.599
FIGURE 1Research design. This flow chart shows the selection process of candidate SNP loci and corresponding genes, subjects recruited and sample collection procedures, and the main methods and technologies used in this study.
General information of subjects for SNP detection.
| KBD ( | Normal ( | χ2 |
| ||
|---|---|---|---|---|---|
| Sex | Male | 71 | 57 | 3.039 | 0.081 |
| Female | 58 | 72 | |||
| Age groups | Juvenile (≤18 years) | 90 | 3 | 127.260 | 1.63E-29 |
| Adult (>18 years) | 39 | 126 | |||
Notes: p < 0.05 denotes significant difference. KBD, is short for Kashin-Beck disease.
General information of subjects for IHC verification.
| Number | KBD | OA | NC | |||||
|---|---|---|---|---|---|---|---|---|
| Sex | Age | Degree | Sex | Age | K-L score | Sex | Age | |
| 1 | Female | 63 | III | Female | 69 | IV | Male | 37 |
| 2 | Male | 56 | III | Male | 76 | IV | Male | 70 |
| 3 | Male | 50 | III | Female | 81 | IV | Female | 62 |
| 4 | Female | 58 | III | Male | 55 | IV | Male | 40 |
| 5 | Male | 57 | III | Male | 63 | IV | Male | 56 |
Notes: All cartilage samples were harvested from the lateral tibial plateau of knee joints of subjects. KBD, is short for Kashin-Beck disease; OA, is short for osteoarthritis; NC, is short for normal control. Such abbreviations mean the same in the following tables and figures.
Comparison of genotypes and alleles between the KBD and control groups.
| Chromosome/SNP | Genotype/allele | KBD ( | Control ( | χ2 |
|
|---|---|---|---|---|---|
| 3/rs12629751 T/C | TT | 5 (3.91) | 12 (9.52) | 3.336 | 0.189 |
| TC | 47 (36.72) | 41 (32.54) | |||
| CC | 76 (59.37) | 73 (57.94) | |||
| T | 57 (22.27) | 65 (25.79) | 0.866 | 0.352 | |
| C | 199 (77.73) | 187 (74.21) | |||
| 4/rs3775296 A/C | AA | 9 (6.98) | 6 (4.76) | 6.191 | 0.045 |
| AC | 39 (30.23) | 57 (45.24) | |||
| CC | 81 (62.79) | 63 (0.50) | |||
| A | 57 (22.09) | 69 (27.38) | 1.916 | 0.166 | |
| C | 201 (77.91) | 183 (72.62) | |||
| 7/rs1800796 G/C | GG | 8 (6.20) | 23 (18.11) | 8.958 | 0.011 |
| GC | 60 (46.51) | 47 (37.01) | |||
| CC | 61 (47.29) | 57 (44.88) | |||
| G | 76 (29.46) | 93 (36.61) | 2.965 | 0.085 | |
| C | 182 (70.54) | 161 (63.39) | |||
| 10/rs1871054 T/C | TT | 29 (22.48) | 15 (11.81) | 5.223 | 0.073 |
| TC | 62 (48.06) | 67 (52.76) | |||
| CC | 38 (29.46) | 45 (35.43) | |||
| T | 120 (46.51) | 97 (38.19) | 3.63 | 0.057 | |
| C | 138 (53.49) | 157 (61.81) | |||
| 15/rs6494629 C/T | CC | 15 (11.72) | 23 (17.97) | 6.847 | 0.033 |
| CT | 52 (40.63) | 64 (0.50) | |||
| TT | 61 (47.65) | 41 (32.03) | |||
| C | 82 (32.03) | 110 (42.97) | 6.533 | 0.011 | |
| T | 174 (67.97) | 146 (57.03) | |||
| 17/rs4789936 T/C | TT | 11 (8.59) | 9 (7.03) | 0.398 | 0.819 |
| TC | 45 (35.16) | 49 (38.28) | |||
| CC | 72 (56.25) | 70 (54.69) | |||
| T | 67 (26.17) | 67 (26.17) | 0 | 1 | |
| C | 189 (73.83) | 189 (73.83) |
Notes: p < 0.05 denotes significant difference. SNP, is short for single nucleotide polymorphism, and such abbreviation means the same in the following tables and figures.
Candidate SNP loci with KBD identified by association analysis.
| Chromosome/SNP | Model | OR (95%CI) |
| Adjusted OR (95% CI) | Adjusted |
|---|---|---|---|---|---|
| 3/rs12629751 T/C | Additive | 0.78 (0.52, 1.17) | 0.226 | 0.46 (0.25, 0.85) | 0.012 |
| Dominant | 0.93 (0.56, 1.53) | 0.775 | 0.45 (0.20, 0.99) | 0.049 | |
| Recessive | 0.38 (0.13, 1.12) | 0.071 | 0.18 (0.05, 0.75) | 0.018 | |
| 4/rs3775296 A/C | Additive | 0.77 (0.51, 1.17) | 0.226 | 0.76 (0.42, 1.40) | 0.382 |
| Dominant | 0.60 (0.36, 0.99) | 0.045 | 0.67 (0.32, 1.38) | 0.272 | |
| Recessive | 1.51 (0.52, 4.38) | 0.443 | 1.16 (0.20, 6.63) | 0.870 | |
| 7/rs1800796 G/C | Additive | 0.75 (0.52, 1.08) | 0.120 | 0.78 (0.46, 1.33) | 0.359 |
| Dominant | 0.92 (0.56, 1.51) | 0.750 | 1.04 (0.50, 2.16) | 0.909 | |
| Recessive | 0.30 (0.13, 0.70) | 0.003 | 0.31 (0.10, 0.97) | 0.043 | |
| 10/rs1871054 T/C | Additive | 1.38 (0.96, 1.99) | 0.085 | 1.54 (0.92, 2.59) | 0.102 |
| Dominant | 1.30 (0.77, 2.20) | 0.328 | 1.32 (0.62, 2.81) | 0.475 | |
| Recessive | 2.19 (1.11, 4.31) | 0.022 | 2.89 (1.08, 7.75) | 0.035 | |
| 15/rs6494629 C/T | Additive | 0.65 (0.45, 0.93) | 0.019 | 0.84 (0.48, 1.46) | 0.541 |
| Dominant | 0.52 (0.31, 0.87) | 0.012 | 0.71 (0.34, 1.50) | 0.371 | |
| Recessive | 0.60 (0.30, 1.21) | 0.152 | 1.05 (0.35, 3.15) | 0.934 | |
| 17/rs4789936 T/C | Additive | 1.03 (0.70, 1.52) | 0.879 | 1.31 (0.73, 2.36) | 0.368 |
| Dominant | 0.96 (0.58, 1.57) | 0.856 | 1.00 (0.48, 2.06) | 0.998 | |
| Recessive | 1.40 (0.54, 3.60) | 0.485 | 5.90 (1.26, 27.59) | 0.024 |
Notes: Data have been adjusted by age and sex; p < 0.05 denotes significant difference.
Candidate SNP loci corresponding genes and associated interactions with selenium and T-2 toxin.
| SNP loci | Gene name | Associated chemicals | Interactions from the CTD database | References: Pubmed ID |
|---|---|---|---|---|
| rs12629751 | PPARG | Selenium | PPARG protein promotes the reaction [Selenium inhibits the reaction [lipopolysaccharide, | 17439952 |
| Selenium promotes the reaction [lipopolysaccharide, | 17439952 | |||
| Sodium selenite | Sodium selenite inhibits the reaction [2-cresol results in increased expression of PPARG mRNA] | 21705299 | ||
| Sodium selenite results in increased expression of PPARG protein | 24140496 | |||
| T-2 toxin | T-2 toxin results in increased expression of PPARG mRNA | 26141394 | ||
| rs1800796 | IL6 | Selenium | [Cadmium analog co-treated with selenium analog co-treated with zinc sulfide analog] results in increased expression of IL6 mRNA | 21481475 |
| Selenium affects the reaction [mercuric chloride results in decreased expression of IL6 protein] | 26089086 | |||
| Sodium selenite | [Sodium selenite co-treated with plant extracts] inhibits the reaction [sodium arsenite results in increased expression of IL6 protein] | 26085057 | ||
| Sodium selenite inhibits the reaction [cadmium chloride results in increased expression of IL6 protein] | 24954678 | |||
| Sodium selenite inhibits the reaction [IL6 protein results in increased activity of AR protein] | 17346688 | |||
| Sodium selenite inhibits the reaction [IL6 protein results in increased expression of KLK3 protein] | 17346688 | |||
| Sodium selenite inhibits the reaction [sodium arsenite results in increased expression of IL6 protein] | 26085057 | |||
| Sodium selenite inhibits the reaction [TGFB1 protein results in increased expression of IL6 protein] | 16757516 | |||
| Sodium selenite results in increased expression of IL6 mRNA | 18175754 | |||
| T-2 toxin | AKNA protein affects the reaction [T-2 toxin results in increased expression of IL6 mRNA] | 29079362 | ||
| Alpha-cyano-(3,4-dihydroxy)-N-benzylcinnamide inhibits the reaction [T-2 toxin results in increased expression of IL6 mRNA] | 22454431 | |||
| Stattic inhibits the reaction [T-2 toxin results in increased expression of IL6 mRNA] | 22454431 | |||
| T-2 toxin results in increased expression of IL6 mRNA | 29079362 | |||
| rs1871054 | ADAM12 | Sodium selenite | Sodium selenite results in decreased expression of ADAM12 mRNA | 18175754 |
| rs6494629 | SMAD3 | Sodium selenite | Sodium selenite results in increased expression of SMAD3 mRNA | 18175754 |
| rs4789936 | TIMP2 | Selenium | Selenium inhibits the reaction [T-2 toxin results in decreased expression of TIMP2 protein] | 21144892 |
| Selenium results in decreased expression of TIMP2 mRNA | 17390030 | |||
| T-2 toxin | Selenium inhibits the reaction [T-2 toxin results in decreased expression of TIMP2 protein] | 21144892 | ||
| T-2 toxin affects the expression of TIMP2 mRNA | 21112371 | |||
| T-2 toxin results in decreased expression of TIMP2 protein | 21144892 |
Note: CTD, is short for Comparative Toxicogenomics Database.
FIGURE 2Representative immunohistochemistry staining of PPARG (A) and TIMP2 (B) in OA, KBD, and normal control cartilage tissues. The scores of different areas (superficial, middle, and deep) in cartilage tissues displayed by box plot (n = 5). *p < 0.05.
FIGURE 3Representative immunohistochemistry staining of ADAM12 (A) and SMAD3 (B) in OA, KBD, and normal control cartilage tissues. The scores of different areas (superficial, middle, and deep) in cartilage tissues displayed by box plot (n = 5). *p < 0.05.