| Literature DB >> 30889929 |
Mary Revelas1,2, Anbupalam Thalamuthu3,4, Christopher Oldmeadow5, Tiffany-Jane Evans6, Nicola J Armstrong7,8, Carlos Riveros9,10, John B Kwok11,12, Peter R Schofield13,14, Henry Brodaty15,16, Rodney J Scott17,18, John R Attia19,20, Perminder S Sachdev21,22, Karen A Mather23,24.
Abstract
Studies investigating exceptionally long-lived (ELL) individuals, including genetic studies, have linked cardiovascular-related pathways, particularly lipid and cholesterol homeostasis, with longevity. This study explored the genetic profiles of ELL individuals (cases: n = 294, 95⁻106 years; controls: n = 1105, 55⁻65 years) by assessing their polygenic risk scores (PRS) based on a genome wide association study (GWAS) threshold of p < 5 × 10-5. PRS were constructed using GWAS summary data from two exceptional longevity (EL) analyses and eight cardiovascular-related risk factors (lipids) and disease (myocardial infarction, coronary artery disease, stroke) analyses. A higher genetic risk for exceptional longevity (EL) was significantly associated with longevity in our sample (odds ratio (OR) = 1.19⁻1.20, p = 0.00804 and 0.00758, respectively). Two cardiovascular health PRS were nominally significant with longevity (HDL cholesterol, triglycerides), with higher PRS associated with EL, but these relationships did not survive correction for multiple testing. In conclusion, ELL individuals did not have significantly lower polygenic risk for the majority of the investigated cardiovascular health traits. Future work in larger cohorts is required to further explore the role of cardiovascular-related genetic variants in EL.Entities:
Keywords: cardiovascular health; exceptional longevity; lipid profile; polygenic risk score
Mesh:
Substances:
Year: 2019 PMID: 30889929 PMCID: PMC6471529 DOI: 10.3390/genes10030227
Source DB: PubMed Journal: Genes (Basel) ISSN: 2073-4425 Impact factor: 4.096
Sample characteristics of long-lived cases (≥95 years) and younger controls (55–65 years).
| Cases | Controls | ||
|---|---|---|---|
| Cohort | SCS/Sydney MAS | HCS | |
| Sample size ( | 294 | 1105 | N/A |
| Age range (mean ± SD) | 95–106 (96.1 ± 4.1) | 55–65 (60.3 ± 2.8) | N/A |
| 90 (31) | 518 (47) | N/A | |
| 120 (40.1) | 475 (42.9) | 0.503564 | |
| 43 (14.6) | 340 (30.8) | 1.49 × 10−8 | |
| HDL (mean ± SD) (% missing) | 1.47 ± 0.45 (17.1) | 1.36 ± 0.37 (0.6) | 0.148557 |
| LDL (mean ± SD) (% missing) | 2.69 ± 1.02 (17.3) | 3.25 ± 0.91 (12.3) | 1.23 × 10−19 |
| TC (mean ± SD) (% missing) | 4.75 ± 1.16 (17.0) | 5.24 ± 1.03 (0) | 6.37 × 10−15 |
| TG (mean ± SD) (% missing) | 1.31 ± 0.63 (17.0) | 1.41 ± 1.12 (0.6) | 0.492286 |
Notes: HDL = high-density lipoprotein, LDL = low-density lipoprotein, TC = total cholesterol, TG = total triglyceride. Raw mean values are reported. a, APOC3 SNP rs2542052.
Longevity and cardiovascular-related risk and disease phenotypes examined, with the number of single nucleotide polymorphisms (SNPs) included in each polygenic risk score (PRS) at two GWAS p-value cut-offs.
| Phenotype [GWAS ref] | N SNPs | N SNPs | Total Number of GWAS SNPs Available |
|---|---|---|---|
| Exceptional longevity | |||
| Exceptional longevity [ | 0 | 32 | 184,562 |
| Exceptional parental longevity [ | 0 | 123 | 476,093 |
| Cardiovascular health | |||
| Myocardial infarction [ | 35 | 107 | 19,607 |
| Stroke [ | 11 | 226 | 471,632 |
| Coronary artery disease [ | 96 | 447 | 460,589 |
| Essential hypertension ( | 2 | 107 | 476,069 |
| HDL [ | 318 | 685 | 204,118 |
| LDL [ | 301 | 652 | 202,316 |
| Cholesterol [ | 367 | 797 | 204,123 |
| Triglycerides [ | 238 | 592 | 201,879 |
Notes: SNP numbers are after QC steps for the PRS calculation, including removal of any SNPs with a poor imputation quality score (≤0.6) and linkage disequilibrium pruning. HDL = high-density lipoprotein, LDL = low-density lipoprotein.
Associations between longevity EL and EPL PRS (p-value threshold < 5 × 10−5) and exceptionally long-lived cases versus controls.
| Odds Ratio (OR) | Standard Error [ | ||
|---|---|---|---|
| PRSEL [ | 1.20 | 0.068 | 0.00758 |
| PRSEPL [ | 1.19 | 0.067 | 0.00804 |
Notes: EPL = exceptional parental longevity, defined as participants with a mother who lived ≥98 years and a father ≥95 years. EL = exceptional longevity, defined as participants who lived ≥90 years. Logistic regressions were adjusted for sex, comparing differences in PRS for ELL vs. controls. ORs expressed in PRS SD units.
Figure 1Density plots visualizing the standardised PRS distributions for EL (exceptional longevity, PRSEL) and EPL (exceptional parental longevity, PRSEPL) in the entire sample and the corresponding box plots in the long-lived cases (95+ years) versus controls (55–65 years).
Associations of different PRS (p-value < 5 × 10−5) for lipid cardiovascular risk factors with measured lipid levels in the combined sample (55–106 years).
| Sample Size ( | Beta (β) | Standard Error [ | ||
|---|---|---|---|---|
| PRSHDL | 1331 | 0.261 | 0.024 | 3.94 × 10−26 |
| PRSLDL | 1196 | 0.200 | 0.028 | 3.81 × 10−13 |
| PRSTC | 1336 | 0.176 | 0.026 | 1.66 × 10−11 |
| PRSTG | 1335 | 0.254 | 0.026 | 2.63 × 10−21 |
Notes. HDL = high-density lipoprotein, LDL = low-density lipoprotein, TC = total cholesterol, TG = total triglyceride. Linear regression adjusted for age and sex, independent variable = PRS, dependent variable = lipid level. All lipid PRS were generated using summary results from Willer et al. [34].
Figure 2Forest plot showing the associations of different cardiovascular PRS with exceptional longevity. Notes. MI = myocardial infarction [31], AS = all stroke [32], CAD = coronary artery disease [33], EssHT = essential hypertension [www.nealelab.is], HDL = high-density lipoprotein, LDL = low-density lipoprotein, TC = total cholesterol, TG = total triglyceride [34]. Logistic regression analyses were adjusted for sex, comparing differences in PRS for ELL vs. controls. PRS were calculated using the relevant GWAS summary results with a p-value threshold < 5 × 10−5.
Figure 3Pearson’s r correlation matrix comparing the genetic overlap between the investigated PRS. Note: EL = exceptional longevity [30], EPL = exceptional parental longevity [8], MI = myocardial infarction [31]; AS = all stroke, CAD = coronary artery disease [33], EssHT = essential hypertension [www.nealelab.is], HDL = high-density lipoprotein, LDL = low-density lipoprotein, TC = total cholesterol and TG = total triglyceride [34]. PRS were calculated using a p-value threshold of p < 5 × 10−5.