Literature DB >> 30878714

Advances in high-speed atomic force microscopy (HS-AFM) reveal dynamics of transmembrane channels and transporters.

George R Heath1, Simon Scheuring2.   

Abstract

Recent advances in high-speed atomic force microscopy (HS-AFM) have made it possible to study the conformational dynamics of single unlabeled transmembrane channels and transporters. Improving environmental control with the integration of a non-disturbing buffer exchange system, which in turn allows the gradual change of conditions during HS-AFM operation, has provided a breakthrough toward the performance of structural titration experiments. Further advancements in temporal resolution with the use of line scanning and height spectroscopy techniques show how high-speed atomic force microscopy can measure millisecond to microsecond dynamics, pushing this method beyond current spatial and temporal limits offered by less direct techniques.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 30878714      PMCID: PMC7216758          DOI: 10.1016/j.sbi.2019.02.008

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  64 in total

1.  Probing protein-protein interactions in real time.

Authors:  M B Viani; L I Pietrasanta; J B Thompson; A Chand; I C Gebeshuber; J H Kindt; M Richter; H G Hansma; P K Hansma
Journal:  Nat Struct Biol       Date:  2000-08

2.  Video imaging of walking myosin V by high-speed atomic force microscopy.

Authors:  Noriyuki Kodera; Daisuke Yamamoto; Ryoki Ishikawa; Toshio Ando
Journal:  Nature       Date:  2010-10-10       Impact factor: 49.962

3.  Structural changes in bacteriorhodopsin in response to alternate illumination observed by high-speed atomic force microscopy.

Authors:  Mikihiro Shibata; Takayuki Uchihashi; Hayato Yamashita; Hideki Kandori; Toshio Ando
Journal:  Angew Chem Int Ed Engl       Date:  2011-04-06       Impact factor: 15.336

4.  Direct visualization of glutamate transporter elevator mechanism by high-speed AFM.

Authors:  Yi Ruan; Atsushi Miyagi; Xiaoyu Wang; Mohamed Chami; Olga Boudker; Simon Scheuring
Journal:  Proc Natl Acad Sci U S A       Date:  2017-01-30       Impact factor: 11.205

5.  A novel phase-shift-based amplitude detector for a high-speed atomic force microscope.

Authors:  Atsushi Miyagi; Simon Scheuring
Journal:  Rev Sci Instrum       Date:  2018-08       Impact factor: 1.523

6.  Spatiotemporal dynamics of the nuclear pore complex transport barrier resolved by high-speed atomic force microscopy.

Authors:  Yusuke Sakiyama; Adam Mazur; Larisa E Kapinos; Roderick Y H Lim
Journal:  Nat Nanotechnol       Date:  2016-05-02       Impact factor: 39.213

Review 7.  High-speed atomic force microscopy and its future prospects.

Authors:  Toshio Ando
Journal:  Biophys Rev       Date:  2017-12-18

8.  Real-time Visualization of Phospholipid Degradation by Outer Membrane Phospholipase A using High-Speed Atomic Force Microscopy.

Authors:  Martina Rangl; Luca Rima; Jessica Klement; Atsushi Miyagi; Sandro Keller; Simon Scheuring
Journal:  J Mol Biol       Date:  2017-03-07       Impact factor: 5.469

9.  Tuning membrane protein mobility by confinement into nanodomains.

Authors:  Andreas Karner; Benedikt Nimmervoll; Birgit Plochberger; Enrico Klotzsch; Andreas Horner; Denis G Knyazev; Roland Kuttner; Klemens Winkler; Lukas Winter; Christine Siligan; Nicole Ollinger; Peter Pohl; Johannes Preiner
Journal:  Nat Nanotechnol       Date:  2016-11-14       Impact factor: 39.213

10.  A natural light-driven inward proton pump.

Authors:  Keiichi Inoue; Shota Ito; Yoshitaka Kato; Yurika Nomura; Mikihiro Shibata; Takayuki Uchihashi; Satoshi P Tsunoda; Hideki Kandori
Journal:  Nat Commun       Date:  2016-11-17       Impact factor: 14.919

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  13 in total

1.  Production and Preparation of Isotopically Labeled Human Membrane Proteins in Pichia pastoris for Fast-MAS-NMR Analyses.

Authors:  Lina Barret; Tobias Schubeis; Valérie Kugler; Lucile Guyot; Guido Pintacuda; Renaud Wagner
Journal:  Methods Mol Biol       Date:  2022

2.  The structural effect between the output module and chromophore-binding domain is a two-way street via the hairpin extension.

Authors:  Moona Kurttila; Stefan Etzl; Jessica Rumfeldt; Heikki Takala; Nadine Galler; Andreas Winkler; Janne A Ihalainen
Journal:  Photochem Photobiol Sci       Date:  2022-08-19       Impact factor: 4.328

3.  Localization atomic force microscopy.

Authors:  George R Heath; Ekaterina Kots; Janice L Robertson; Shifra Lansky; George Khelashvili; Harel Weinstein; Simon Scheuring
Journal:  Nature       Date:  2021-06-16       Impact factor: 49.962

4.  Fluorescence strategies for mapping cell membrane dynamics and structures.

Authors:  Jagadish Sankaran; Thorsten Wohland
Journal:  APL Bioeng       Date:  2020-05-12

5.  Large-scale state-dependent membrane remodeling by a transporter protein.

Authors:  Wenchang Zhou; Giacomo Fiorin; Claudio Anselmi; Hossein Ali Karimi-Varzaneh; Horacio Poblete; Lucy R Forrest; José D Faraldo-Gómez
Journal:  Elife       Date:  2019-12-19       Impact factor: 8.140

6.  Direct visualization of the extracellular binding structure of E-cadherins in liquid.

Authors:  Teiko Shibata-Seki; Masato Nagaoka; Mitsuaki Goto; Eiry Kobatake; Toshihiro Akaike
Journal:  Sci Rep       Date:  2020-10-12       Impact factor: 4.379

7.  Correlation of membrane protein conformational and functional dynamics.

Authors:  Raghavendar Reddy Sanganna Gari; Joel José Montalvo-Acosta; George R Heath; Yining Jiang; Xiaolong Gao; Crina M Nimigean; Christophe Chipot; Simon Scheuring
Journal:  Nat Commun       Date:  2021-07-16       Impact factor: 14.919

8.  Movements of Mycoplasma mobile Gliding Machinery Detected by High-Speed Atomic Force Microscopy.

Authors:  Kohei Kobayashi; Noriyuki Kodera; Taishi Kasai; Yuhei O Tahara; Takuma Toyonaga; Masaki Mizutani; Ikuko Fujiwara; Toshio Ando; Makoto Miyata
Journal:  mBio       Date:  2021-05-28       Impact factor: 7.867

9.  Photocatalytic Nanofabrication and Intracellular Raman Imaging of Living Cells with Functionalized AFM Probes.

Authors:  Takayuki Shibata; Hiromi Furukawa; Yasuharu Ito; Masahiro Nagahama; Terutake Hayashi; Miho Ishii-Teshima; Moeto Nagai
Journal:  Micromachines (Basel)       Date:  2020-05-13       Impact factor: 2.891

10.  Direct visualization of translational GTPase factor pool formed around the archaeal ribosomal P-stalk by high-speed AFM.

Authors:  Hirotatsu Imai; Toshio Uchiumi; Noriyuki Kodera
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-07       Impact factor: 12.779

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