Literature DB >> 30874553

Automating multimodal microscopy with NanoJ-Fluidics.

Pedro Almada1,2, Pedro M Pereira1,2,3, Siân Culley1,2,3, Ghislaine Caillol4, Fanny Boroni-Rueda4, Christina L Dix1, Guillaume Charras5,6, Buzz Baum1,6, Romain F Laine7,8, Christophe Leterrier9, Ricardo Henriques10,11,12.   

Abstract

Combining and multiplexing microscopy approaches is crucial to understand cellular events, but requires elaborate workflows. Here, we present a robust, open-source approach for treating, labelling and imaging live or fixed cells in automated sequences. NanoJ-Fluidics is based on low-cost Lego hardware controlled by ImageJ-based software, making high-content, multimodal imaging easy to implement on any microscope with high reproducibility. We demonstrate its capacity on event-driven, super-resolved live-to-fixed and multiplexed STORM/DNA-PAINT experiments.

Entities:  

Year:  2019        PMID: 30874553      PMCID: PMC6420627          DOI: 10.1038/s41467-019-09231-9

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  33 in total

1.  Multitarget super-resolution microscopy with high-density labeling by exchangeable probes.

Authors:  Tai Kiuchi; Makio Higuchi; Akihiro Takamura; Masahiro Maruoka; Naoki Watanabe
Journal:  Nat Methods       Date:  2015-07-06       Impact factor: 28.547

2.  Super-resolution microscopy with DNA-PAINT.

Authors:  Joerg Schnitzbauer; Maximilian T Strauss; Thomas Schlichthaerle; Florian Schueder; Ralf Jungmann
Journal:  Nat Protoc       Date:  2017-05-18       Impact factor: 13.491

Review 3.  Correlative Super-Resolution Microscopy: New Dimensions and New Opportunities.

Authors:  Meghan Hauser; Michal Wojcik; Doory Kim; Morteza Mahmoudi; Wan Li; Ke Xu
Journal:  Chem Rev       Date:  2017-01-03       Impact factor: 60.622

4.  Aurora B-mediated abscission checkpoint protects against tetraploidization.

Authors:  Patrick Steigemann; Claudia Wurzenberger; Michael H A Schmitz; Michael Held; Julien Guizetti; Sandra Maar; Daniel W Gerlich
Journal:  Cell       Date:  2009-02-06       Impact factor: 41.582

Review 5.  Coupling changes in cell shape to chromosome segregation.

Authors:  Nitya Ramkumar; Buzz Baum
Journal:  Nat Rev Mol Cell Biol       Date:  2016-06-29       Impact factor: 94.444

6.  Evaluation of fluorophores for optimal performance in localization-based super-resolution imaging.

Authors:  Graham T Dempsey; Joshua C Vaughan; Kok Hao Chen; Mark Bates; Xiaowei Zhuang
Journal:  Nat Methods       Date:  2011-11-06       Impact factor: 28.547

7.  Image artifacts in single molecule localization microscopy: why optimization of sample preparation protocols matters.

Authors:  Donna R Whelan; Toby D M Bell
Journal:  Sci Rep       Date:  2015-01-21       Impact factor: 4.379

8.  Cross-talk-free multi-color STORM imaging using a single fluorophore.

Authors:  Johnny Tam; Guillaume Alan Cordier; Joseph Steven Borbely; Angel Sandoval Álvarez; Melike Lakadamyali
Journal:  PLoS One       Date:  2014-07-07       Impact factor: 3.240

9.  VirusMapper: open-source nanoscale mapping of viral architecture through super-resolution microscopy.

Authors:  Robert D M Gray; Corina Beerli; Pedro Matos Pereira; Kathrin Maria Scherer; Jerzy Samolej; Christopher Karl Ernst Bleck; Jason Mercer; Ricardo Henriques
Journal:  Sci Rep       Date:  2016-07-04       Impact factor: 4.379

10.  Quantitative mapping and minimization of super-resolution optical imaging artifacts.

Authors:  Siân Culley; David Albrecht; Caron Jacobs; Pedro Matos Pereira; Christophe Leterrier; Jason Mercer; Ricardo Henriques
Journal:  Nat Methods       Date:  2018-02-19       Impact factor: 28.547

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  21 in total

1.  Super-resolution optofluidic scanning microscopy.

Authors:  Biagio Mandracchia; Jeonghwan Son; Shu Jia
Journal:  Lab Chip       Date:  2021-02-09       Impact factor: 6.799

Review 2.  Constructing a cost-efficient, high-throughput and high-quality single-molecule localization microscope for super-resolution imaging.

Authors:  John S H Danial; Jeff Y L Lam; Yunzhao Wu; Matthew Woolley; Eleni Dimou; Matthew R Cheetham; Derya Emin; David Klenerman
Journal:  Nat Protoc       Date:  2022-08-24       Impact factor: 17.021

3.  Single-molecule localization microscopy.

Authors:  Mickaël Lelek; Melina T Gyparaki; Gerti Beliu; Florian Schueder; Juliette Griffié; Suliana Manley; Ralf Jungmann; Markus Sauer; Melike Lakadamyali; Christophe Zimmer
Journal:  Nat Rev Methods Primers       Date:  2021-06-03

4.  Event-driven acquisition for content-enriched microscopy.

Authors:  Dora Mahecic; Willi L Stepp; Chen Zhang; Juliette Griffié; Martin Weigert; Suliana Manley
Journal:  Nat Methods       Date:  2022-09-08       Impact factor: 47.990

Review 5.  Between life and death: strategies to reduce phototoxicity in super-resolution microscopy.

Authors:  Kalina L Tosheva; Yue Yuan; Pedro Matos Pereira; Siân Culley; Ricardo Henriques
Journal:  J Phys D Appl Phys       Date:  2020-02-14       Impact factor: 3.207

Review 6.  Technological advances in super-resolution microscopy to study cellular processes.

Authors:  Charles Bond; Adriana N Santiago-Ruiz; Qing Tang; Melike Lakadamyali
Journal:  Mol Cell       Date:  2022-01-20       Impact factor: 17.970

7.  Fix Your Membrane Receptor Imaging: Actin Cytoskeleton and CD4 Membrane Organization Disruption by Chemical Fixation.

Authors:  Pedro M Pereira; David Albrecht; Siân Culley; Caron Jacobs; Mark Marsh; Jason Mercer; Ricardo Henriques
Journal:  Front Immunol       Date:  2019-04-05       Impact factor: 7.561

8.  Quantitative analysis of super-resolved structures using ASAP.

Authors:  John S H Danial; Ana J Garcia-Saez
Journal:  Nat Methods       Date:  2019-07-01       Impact factor: 28.547

Review 9.  Automation in the Life Science Research Laboratory.

Authors:  Ian Holland; Jamie A Davies
Journal:  Front Bioeng Biotechnol       Date:  2020-11-13

Review 10.  NanoJ: a high-performance open-source super-resolution microscopy toolbox.

Authors:  Romain F Laine; Kalina L Tosheva; Nils Gustafsson; Robert D M Gray; Pedro Almada; David Albrecht; Gabriel T Risa; Fredrik Hurtig; Ann-Christin Lindås; Buzz Baum; Jason Mercer; Christophe Leterrier; Pedro M Pereira; Siân Culley; Ricardo Henriques
Journal:  J Phys D Appl Phys       Date:  2019-02-18       Impact factor: 3.207

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