Literature DB >> 26147917

Multitarget super-resolution microscopy with high-density labeling by exchangeable probes.

Tai Kiuchi1, Makio Higuchi1, Akihiro Takamura2, Masahiro Maruoka2, Naoki Watanabe3.   

Abstract

We have developed a multitarget super-resolution microscopy technique called image reconstruction by integrating exchangeable single-molecule localization (IRIS). IRIS uses protein fragment-based probes that directly associate with and dissociate from their targets over durations on the order of tens of milliseconds. By integrating single-molecule localization and sequential labeling, IRIS enables unprecedented labeling density along multiple cellular structures. IRIS can be used to discern the area-specific proximity between cytoskeletal components and focal adhesions within a single cell.

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Year:  2015        PMID: 26147917     DOI: 10.1038/nmeth.3466

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  31 in total

1.  Actin polymerization-driven molecular movement of mDia1 in living cells.

Authors:  Chiharu Higashida; Takushi Miyoshi; Akiko Fujita; Fabian Oceguera-Yanez; James Monypenny; Yoshikazu Andou; Shuh Narumiya; Naoki Watanabe
Journal:  Science       Date:  2004-03-26       Impact factor: 47.728

2.  The Rho-mDia1 pathway regulates cell polarity and focal adhesion turnover in migrating cells through mobilizing Apc and c-Src.

Authors:  Norikazu Yamana; Yoshiki Arakawa; Tomohiro Nishino; Kazuo Kurokawa; Masahiro Tanji; Reina E Itoh; James Monypenny; Toshimasa Ishizaki; Haruhiko Bito; Kazuhiko Nozaki; Nobuo Hashimoto; Michiyuki Matsuda; Shuh Narumiya
Journal:  Mol Cell Biol       Date:  2006-09       Impact factor: 4.272

3.  TIRF microscopy evanescent field calibration using tilted fluorescent microtubules.

Authors:  C Gell; M Berndt; J Enderlein; S Diez
Journal:  J Microsc       Date:  2009-04       Impact factor: 1.758

4.  Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics.

Authors:  Hari Shroff; Catherine G Galbraith; James A Galbraith; Eric Betzig
Journal:  Nat Methods       Date:  2008-04-13       Impact factor: 28.547

5.  Kin I kinesins are microtubule-destabilizing enzymes.

Authors:  A Desai; S Verma; T J Mitchison; C E Walczak
Journal:  Cell       Date:  1999-01-08       Impact factor: 41.582

6.  mDia1 targets v-Src to the cell periphery and facilitates cell transformation, tumorigenesis, and invasion.

Authors:  Masahiro Tanji; Toshimasa Ishizaki; Saman Ebrahimi; Yuko Tsuboguchi; Taiko Sukezane; Tsuyoshi Akagi; Margaret C Frame; Nobuo Hashimoto; Susumu Miyamoto; Shuh Narumiya
Journal:  Mol Cell Biol       Date:  2010-08-02       Impact factor: 4.272

7.  Rotational movement of formins evaluated by using single-molecule fluorescence polarization.

Authors:  Hiroaki Mizuno; Naoki Watanabe
Journal:  Methods Enzymol       Date:  2014       Impact factor: 1.600

8.  Breaking the diffraction barrier: super-resolution imaging of cells.

Authors:  Bo Huang; Hazen Babcock; Xiaowei Zhuang
Journal:  Cell       Date:  2010-12-23       Impact factor: 41.582

9.  New single-molecule speckle microscopy reveals modification of the retrograde actin flow by focal adhesions at nanometer scales.

Authors:  Sawako Yamashiro; Hiroaki Mizuno; Matthew B Smith; Gillian L Ryan; Tai Kiuchi; Dimitrios Vavylonis; Naoki Watanabe
Journal:  Mol Biol Cell       Date:  2014-02-05       Impact factor: 4.138

10.  Whole-cell 3D STORM reveals interactions between cellular structures with nanometer-scale resolution.

Authors:  Bo Huang; Sara A Jones; Boerries Brandenburg; Xiaowei Zhuang
Journal:  Nat Methods       Date:  2008-11-23       Impact factor: 28.547

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  53 in total

1.  Small fluorescence-activating and absorption-shifting tag for tunable protein imaging in vivo.

Authors:  Marie-Aude Plamont; Emmanuelle Billon-Denis; Sylvie Maurin; Carole Gauron; Frederico M Pimenta; Christian G Specht; Jian Shi; Jérôme Quérard; Buyan Pan; Julien Rossignol; Karine Moncoq; Nelly Morellet; Michel Volovitch; Ewen Lescop; Yong Chen; Antoine Triller; Sophie Vriz; Thomas Le Saux; Ludovic Jullien; Arnaud Gautier
Journal:  Proc Natl Acad Sci U S A       Date:  2015-12-28       Impact factor: 11.205

2.  Advancing multiscale structural mapping of the brain through fluorescence imaging and analysis across length scales.

Authors:  L J Hogstrom; S M Guo; K Murugadoss; M Bathe
Journal:  Interface Focus       Date:  2016-02-06       Impact factor: 3.906

Review 3.  Quantitative high-precision imaging of myosin-dependent filamentous actin dynamics.

Authors:  Sawako Yamashiro; Naoki Watanabe
Journal:  J Muscle Res Cell Motil       Date:  2019-07-16       Impact factor: 2.698

4.  Convection-Induced Biased Distribution of Actin Probes in Live Cells.

Authors:  Sawako Yamashiro; Daisuke Taniguchi; Soichiro Tanaka; Tai Kiuchi; Dimitrios Vavylonis; Naoki Watanabe
Journal:  Biophys J       Date:  2018-11-22       Impact factor: 4.033

Review 5.  Advanced imaging and labelling methods to decipher brain cell organization and function.

Authors:  Daniel Choquet; Matthieu Sainlos; Jean-Baptiste Sibarita
Journal:  Nat Rev Neurosci       Date:  2021-03-12       Impact factor: 34.870

Review 6.  Photostable and photoswitching fluorescent dyes for super-resolution imaging.

Authors:  Masafumi Minoshima; Kazuya Kikuchi
Journal:  J Biol Inorg Chem       Date:  2017-01-12       Impact factor: 3.358

7.  A Bayesian cluster analysis method for single-molecule localization microscopy data.

Authors:  Juliette Griffié; Michael Shannon; Claire L Bromley; Lies Boelen; Garth L Burn; David J Williamson; Nicholas A Heard; Andrew P Cope; Dylan M Owen; Patrick Rubin-Delanchy
Journal:  Nat Protoc       Date:  2016-11-17       Impact factor: 13.491

8.  Overcoming obstacles in localization microscopy.

Authors:  Ralf Jungmann
Journal:  Nat Methods       Date:  2016-04       Impact factor: 28.547

9.  Expansion microscopy passes its first test.

Authors:  Hylkje Geertsema; Helge Ewers
Journal:  Nat Methods       Date:  2016-05-31       Impact factor: 28.547

10.  Dense small molecule labeling enables activator-dependent STORM by proximity mapping.

Authors:  Ye Chen; Min Gu; Peter W Gunning; Sarah M Russell
Journal:  Histochem Cell Biol       Date:  2016-05-31       Impact factor: 4.304

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