Literature DB >> 30865284

PleioNet: a web-based visualization tool for exploring pleiotropy across complex traits.

X Raymond Gao1, Hua Huang2.   

Abstract

SUMMARY: Pleiotropy plays an important role in furthering our understanding of the shared genetic architecture of different human diseases and traits. However, exploring and visualizing pleiotropic information with currently publicly available tools is limiting and challenging. To aid researchers in constructing and digesting pleiotropic networks, we present PleioNet, a web-based visualization tool for exploring this information across human diseases and traits. This program provides an intuitive and interactive web interface that seamlessly integrates large database queries with visualizations that enable users to quickly explore complex high-dimensional pleiotropic information. PleioNet works on all modern computer and mobile web browsers, making pleiotropic information readily available to a broad range of researchers and clinicians with diverse technical backgrounds. We expect that PleioNet will be an important tool for studying the underlying pleiotropic connections among human diseases and traits.
AVAILABILITY AND IMPLEMENTATION: PleioNet is hosted on Google cloud and freely available at http://www.pleionet.com/.
© The Author(s) 2019. Published by Oxford University Press. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

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Year:  2019        PMID: 30865284      PMCID: PMC6792104          DOI: 10.1093/bioinformatics/btz179

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  8 in total

Review 1.  One hundred years of pleiotropy: a retrospective.

Authors:  Frank W Stearns
Journal:  Genetics       Date:  2010-11       Impact factor: 4.562

Review 2.  Navigating pleiotropy in precision medicine: pharmacogenes from trauma to behavioral health.

Authors:  Vicki Oberg; Jerome Differding; Morgan Fisher; Lindsay Hines; Russell A Wilke
Journal:  Pharmacogenomics       Date:  2016-03-29       Impact factor: 2.533

3.  A plethora of pleiotropy across complex traits.

Authors:  Peter M Visscher; Jian Yang
Journal:  Nat Genet       Date:  2016-06-28       Impact factor: 38.330

4.  The ubiquity of pleiotropy in human disease.

Authors:  Kevin Chesmore; Jacquelaine Bartlett; Scott M Williams
Journal:  Hum Genet       Date:  2017-11-21       Impact factor: 4.132

Review 5.  Pleiotropy in complex traits: challenges and strategies.

Authors:  Nadia Solovieff; Chris Cotsapas; Phil H Lee; Shaun M Purcell; Jordan W Smoller
Journal:  Nat Rev Genet       Date:  2013-06-11       Impact factor: 53.242

Review 6.  Abundant pleiotropy in human complex diseases and traits.

Authors:  Shanya Sivakumaran; Felix Agakov; Evropi Theodoratou; James G Prendergast; Lina Zgaga; Teri Manolio; Igor Rudan; Paul McKeigue; James F Wilson; Harry Campbell
Journal:  Am J Hum Genet       Date:  2011-11-11       Impact factor: 11.025

7.  The new NHGRI-EBI Catalog of published genome-wide association studies (GWAS Catalog).

Authors:  Jacqueline MacArthur; Emily Bowler; Maria Cerezo; Laurent Gil; Peggy Hall; Emma Hastings; Heather Junkins; Aoife McMahon; Annalisa Milano; Joannella Morales; Zoe May Pendlington; Danielle Welter; Tony Burdett; Lucia Hindorff; Paul Flicek; Fiona Cunningham; Helen Parkinson
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

8.  Detection and interpretation of shared genetic influences on 42 human traits.

Authors:  Joseph K Pickrell; Tomaz Berisa; Jimmy Z Liu; Laure Ségurel; Joyce Y Tung; David A Hinds
Journal:  Nat Genet       Date:  2016-05-16       Impact factor: 38.330

  8 in total
  1 in total

1.  NETMAGE: A human disease phenotype map generator for the network-based visualization of phenome-wide association study results.

Authors:  Vivek Sriram; Manu Shivakumar; Sang-Hyuk Jung; Yonghyun Nam; Lisa Bang; Anurag Verma; Seunggeun Lee; Eun Kyung Choe; Dokyoon Kim
Journal:  Gigascience       Date:  2022-02-15       Impact factor: 7.658

  1 in total

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