Literature DB >> 30856581

The amazing HK97 fold: versatile results of modest differences.

Robert L Duda1, Carolyn M Teschke2.   

Abstract

dsDNA Bacteriophages, some dsDNA archaeal viruses and the Herpesviruses share many features including a common capsid assembly pathway and coat protein fold. The coat proteins of these viruses, which have the HK97 fold, co-assemble with a free or attached scaffolding protein and other capsid proteins into a precursor capsid, known as a procapsid or prohead. The procapsid is a metastable state that increases in stability as a result of morphological changes that occur during the dsDNA packaging reaction. We review evidence from several systems indicating that proper contacts acquired in the assembly of the procapsid are critical to forming the correct morphology in the mature capsid.
Copyright © 2019 Elsevier B.V. All rights reserved.

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Year:  2019        PMID: 30856581      PMCID: PMC6626583          DOI: 10.1016/j.coviro.2019.02.001

Source DB:  PubMed          Journal:  Curr Opin Virol        ISSN: 1879-6257            Impact factor:   7.090


  56 in total

Review 1.  Virus maturation: dynamics and mechanism of a stabilizing structural transition that leads to infectivity.

Authors:  Alasdair C Steven; J Bernard Heymann; Naiqian Cheng; Benes L Trus; James F Conway
Journal:  Curr Opin Struct Biol       Date:  2005-04       Impact factor: 6.809

2.  Mutational analysis of a conserved glutamic acid required for self-catalyzed cross-linking of bacteriophage HK97 capsids.

Authors:  Lindsay E Dierkes; Craig L Peebles; Brian A Firek; Roger W Hendrix; Robert L Duda
Journal:  J Virol       Date:  2008-12-17       Impact factor: 5.103

3.  Cryo-EM structure of the bacteriophage T4 isometric head at 3.3-Å resolution and its relevance to the assembly of icosahedral viruses.

Authors:  Zhenguo Chen; Lei Sun; Zhihong Zhang; Andrei Fokine; Victor Padilla-Sanchez; Dorit Hanein; Wen Jiang; Michael G Rossmann; Venigalla B Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-11       Impact factor: 11.205

4.  P22 coat protein structures reveal a novel mechanism for capsid maturation: stability without auxiliary proteins or chemical crosslinks.

Authors:  Kristin N Parent; Reza Khayat; Long H Tu; Margaret M Suhanovsky; Juliana R Cortines; Carolyn M Teschke; John E Johnson; Timothy S Baker
Journal:  Structure       Date:  2010-03-10       Impact factor: 5.006

5.  Cryo-reconstructions of P22 polyheads suggest that phage assembly is nucleated by trimeric interactions among coat proteins.

Authors:  Kristin N Parent; Robert S Sinkovits; Margaret M Suhanovsky; Carolyn M Teschke; Edward H Egelman; Timothy S Baker
Journal:  Phys Biol       Date:  2010-12-09       Impact factor: 2.583

6.  The crystal structure of a virus-like particle from the hyperthermophilic archaeon Pyrococcus furiosus provides insight into the evolution of viruses.

Authors:  Fusamichi Akita; Khoon Tee Chong; Hideaki Tanaka; Eiki Yamashita; Naoyuki Miyazaki; Yuichiro Nakaishi; Mamoru Suzuki; Kazunori Namba; Yasuko Ono; Tomitake Tsukihara; Atsushi Nakagawa
Journal:  J Mol Biol       Date:  2007-03-02       Impact factor: 5.469

7.  A pseudo-atomic model for the capsid shell of bacteriophage lambda using chemical cross-linking/mass spectrometry and molecular modeling.

Authors:  Pragya Singh; Eri Nakatani; David R Goodlett; Carlos Enrique Catalano
Journal:  J Mol Biol       Date:  2013-06-25       Impact factor: 5.469

8.  A Molecular Staple: D-Loops in the I Domain of Bacteriophage P22 Coat Protein Make Important Intercapsomer Contacts Required for Procapsid Assembly.

Authors:  Nadia G D'Lima; Carolyn M Teschke
Journal:  J Virol       Date:  2015-08-12       Impact factor: 5.103

9.  Capsids and Genomes of Jumbo-Sized Bacteriophages Reveal the Evolutionary Reach of the HK97 Fold.

Authors:  Jianfei Hua; Alexis Huet; Carlos A Lopez; Katerina Toropova; Welkin H Pope; Robert L Duda; Roger W Hendrix; James F Conway
Journal:  MBio       Date:  2017-10-17       Impact factor: 7.867

10.  Competing scaffolding proteins determine capsid size during mobilization of Staphylococcus aureus pathogenicity islands.

Authors:  Altaira D Dearborn; Erin A Wall; James L Kizziah; Laura Klenow; Laura K Parker; Keith A Manning; Michael S Spilman; John M Spear; Gail E Christie; Terje Dokland
Journal:  Elife       Date:  2017-10-06       Impact factor: 8.140

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  18 in total

Review 1.  The LUCA and its complex virome.

Authors:  Mart Krupovic; Valerian V Dolja; Eugene V Koonin
Journal:  Nat Rev Microbiol       Date:  2020-07-14       Impact factor: 60.633

2.  Capsid expansion of bacteriophage T5 revealed by high resolution cryoelectron microscopy.

Authors:  Alexis Huet; Robert L Duda; Pascale Boulanger; James F Conway
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-02       Impact factor: 11.205

3.  A Hydrophobic Network: Intersubunit and Intercapsomer Interactions Stabilizing the Bacteriophage P22 Capsid.

Authors:  Kunica Asija; Carolyn M Teschke
Journal:  J Virol       Date:  2019-06-28       Impact factor: 5.103

4.  Structures of a large prolate virus capsid in unexpanded and expanded states generate insights into the icosahedral virus assembly.

Authors:  Qianglin Fang; Wei-Chun Tang; Andrei Fokine; Marthandan Mahalingam; Qianqian Shao; Michael G Rossmann; Venigalla B Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-26       Impact factor: 12.779

5.  Hysteresis in Hepatitis B Virus (HBV) Requires Assembly of Near-Perfect Capsids.

Authors:  Caleb A Starr; Lauren F Barnes; Martin F Jarrold; Adam Zlotnick
Journal:  Biochemistry       Date:  2022-03-08       Impact factor: 3.321

Review 6.  Phage diversity, genomics and phylogeny.

Authors:  Moïra B Dion; Frank Oechslin; Sylvain Moineau
Journal:  Nat Rev Microbiol       Date:  2020-02-03       Impact factor: 60.633

7.  The architecture and stabilisation of flagellotropic tailed bacteriophages.

Authors:  Joshua M Hardy; Rhys A Dunstan; Rhys Grinter; Matthew J Belousoff; Jiawei Wang; Derek Pickard; Hariprasad Venugopal; Gordon Dougan; Trevor Lithgow; Fasséli Coulibaly
Journal:  Nat Commun       Date:  2020-07-27       Impact factor: 14.919

Review 8.  Molecular Piracy: Redirection of Bacteriophage Capsid Assembly by Mobile Genetic Elements.

Authors:  Terje Dokland
Journal:  Viruses       Date:  2019-10-31       Impact factor: 5.048

Review 9.  Keeping It Together: Structures, Functions, and Applications of Viral Decoration Proteins.

Authors:  Corynne L Dedeo; Carolyn M Teschke; Andrei T Alexandrescu
Journal:  Viruses       Date:  2020-10-14       Impact factor: 5.048

Review 10.  Nanotechnological Applications Based on Bacterial Encapsulins.

Authors:  Javier M Rodríguez; Carolina Allende-Ballestero; Jeroen J L M Cornelissen; José R Castón
Journal:  Nanomaterials (Basel)       Date:  2021-06-01       Impact factor: 5.076

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