Literature DB >> 31578255

Capsid expansion of bacteriophage T5 revealed by high resolution cryoelectron microscopy.

Alexis Huet1,2, Robert L Duda2, Pascale Boulanger3, James F Conway4.   

Abstract

The large (90-nm) icosahedral capsid of bacteriophage T5 is composed of 775 copies of the major capsid protein (mcp) together with portal, protease, and decoration proteins. Its assembly is a regulated process that involves several intermediates, including a thick-walled round precursor prohead that expands as the viral DNA is packaged to yield a thin-walled and angular mature capsid. We investigated capsid maturation by comparing cryoelectron microscopy (cryo-EM) structures of the prohead, the empty expanded capsid both with and without decoration protein, and the virion capsid at a resolution of 3.8 Å for the latter. We detail the molecular structure of the mcp, its complex pattern of interactions, and their evolution during maturation. The bacteriophage T5 mcp is a variant of the canonical HK97-fold with a high level of plasticity that allows for the precise assembly of a giant macromolecule and the adaptability needed to interact with other proteins and the packaged DNA.

Entities:  

Keywords:  bacteriophage; capsid; conformational change; cryoelectron microscopy

Year:  2019        PMID: 31578255      PMCID: PMC6800373          DOI: 10.1073/pnas.1909645116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  44 in total

1.  UCSF Chimera--a visualization system for exploratory research and analysis.

Authors:  Eric F Pettersen; Thomas D Goddard; Conrad C Huang; Gregory S Couch; Daniel M Greenblatt; Elaine C Meng; Thomas E Ferrin
Journal:  J Comput Chem       Date:  2004-10       Impact factor: 3.376

2.  Common ancestry of herpesviruses and tailed DNA bacteriophages.

Authors:  Matthew L Baker; Wen Jiang; Frazer J Rixon; Wah Chiu
Journal:  J Virol       Date:  2005-12       Impact factor: 5.103

3.  A two-state cooperative expansion converts the procapsid shell of bacteriophage T5 into a highly stable capsid isomorphous to the final virion head.

Authors:  Olivier Preux; Dominique Durand; Alexis Huet; James F Conway; Aurélie Bertin; Claire Boulogne; Jeannine Drouin-Wahbi; Didier Trévarin; Javier Pérez; Patrice Vachette; Pascale Boulanger
Journal:  J Mol Biol       Date:  2013-03-13       Impact factor: 5.469

4.  Cryo-EM structure of the bacteriophage T4 isometric head at 3.3-Å resolution and its relevance to the assembly of icosahedral viruses.

Authors:  Zhenguo Chen; Lei Sun; Zhihong Zhang; Andrei Fokine; Victor Padilla-Sanchez; Dorit Hanein; Wen Jiang; Michael G Rossmann; Venigalla B Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2017-09-11       Impact factor: 11.205

5.  P22 coat protein structures reveal a novel mechanism for capsid maturation: stability without auxiliary proteins or chemical crosslinks.

Authors:  Kristin N Parent; Reza Khayat; Long H Tu; Margaret M Suhanovsky; Juliana R Cortines; Carolyn M Teschke; John E Johnson; Timothy S Baker
Journal:  Structure       Date:  2010-03-10       Impact factor: 5.006

6.  Insights into bacteriophage T5 structure from analysis of its morphogenesis genes and protein components.

Authors:  Yvan Zivanovic; Fabrice Confalonieri; Luc Ponchon; Rudi Lurz; Mohamed Chami; Ali Flayhan; Madalena Renouard; Alexis Huet; Paulette Decottignies; Alan R Davidson; Cécile Breyton; Pascale Boulanger
Journal:  J Virol       Date:  2013-11-06       Impact factor: 5.103

7.  Outcome of the first electron microscopy validation task force meeting.

Authors:  Richard Henderson; Andrej Sali; Matthew L Baker; Bridget Carragher; Batsal Devkota; Kenneth H Downing; Edward H Egelman; Zukang Feng; Joachim Frank; Nikolaus Grigorieff; Wen Jiang; Steven J Ludtke; Ohad Medalia; Pawel A Penczek; Peter B Rosenthal; Michael G Rossmann; Michael F Schmid; Gunnar F Schröder; Alasdair C Steven; David L Stokes; John D Westbrook; Willy Wriggers; Huanwang Yang; Jasmine Young; Helen M Berman; Wah Chiu; Gerard J Kleywegt; Catherine L Lawson
Journal:  Structure       Date:  2012-02-08       Impact factor: 5.006

8.  Capsids and Genomes of Jumbo-Sized Bacteriophages Reveal the Evolutionary Reach of the HK97 Fold.

Authors:  Jianfei Hua; Alexis Huet; Carlos A Lopez; Katerina Toropova; Welkin H Pope; Robert L Duda; Roger W Hendrix; James F Conway
Journal:  MBio       Date:  2017-10-17       Impact factor: 7.867

9.  The Phyre2 web portal for protein modeling, prediction and analysis.

Authors:  Lawrence A Kelley; Stefans Mezulis; Christopher M Yates; Mark N Wass; Michael J E Sternberg
Journal:  Nat Protoc       Date:  2015-05-07       Impact factor: 13.491

10.  Competing scaffolding proteins determine capsid size during mobilization of Staphylococcus aureus pathogenicity islands.

Authors:  Altaira D Dearborn; Erin A Wall; James L Kizziah; Laura Klenow; Laura K Parker; Keith A Manning; Michael S Spilman; John M Spear; Gail E Christie; Terje Dokland
Journal:  Elife       Date:  2017-10-06       Impact factor: 8.140

View more
  6 in total

Review 1.  Adaptability and specificity: how do proteins balance opposing needs to achieve function?

Authors:  Bentley Wingert; James Krieger; Hongchun Li; Ivet Bahar
Journal:  Curr Opin Struct Biol       Date:  2020-10-11       Impact factor: 6.809

2.  Capsid Structure of Anabaena Cyanophage A-1(L).

Authors:  Ning Cui; Feng Yang; Jun-Tao Zhang; Hui Sun; Yu Chen; Rong-Cheng Yu; Zhi-Peng Chen; Yong-Liang Jiang; Shu-Jing Han; Xudong Xu; Qiong Li; Cong-Zhao Zhou
Journal:  J Virol       Date:  2021-09-22       Impact factor: 5.103

3.  Structures of a large prolate virus capsid in unexpanded and expanded states generate insights into the icosahedral virus assembly.

Authors:  Qianglin Fang; Wei-Chun Tang; Andrei Fokine; Marthandan Mahalingam; Qianqian Shao; Michael G Rossmann; Venigalla B Rao
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-26       Impact factor: 12.779

4.  Cyclic CMP and cyclic UMP mediate bacterial immunity against phages.

Authors:  Nitzan Tal; Benjamin R Morehouse; Adi Millman; Avigail Stokar-Avihail; Carmel Avraham; Taya Fedorenko; Erez Yirmiya; Ehud Herbst; Alexander Brandis; Tevie Mehlman; Yaara Oppenheimer-Shaanan; Alexander F A Keszei; Sichen Shao; Gil Amitai; Philip J Kranzusch; Rotem Sorek
Journal:  Cell       Date:  2021-10-12       Impact factor: 66.850

5.  Kinetics of ATP/ADP binding to the gp16 ATPase.

Authors:  Aaron Morgan; Allen Eastlund; Christopher Fischer; Paul Jardine
Journal:  Biophys J       Date:  2022-04-11       Impact factor: 3.699

6.  High Resolution Structure of the Mature Capsid of Ralstonia solanacearum Bacteriophage ϕRSA1 by Cryo-Electron Microscopy.

Authors:  Grégory Effantin; Akiko Fujiwara; Takeru Kawasaki; Takashi Yamada; Guy Schoehn
Journal:  Int J Mol Sci       Date:  2021-10-13       Impact factor: 5.923

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.