| Literature DB >> 30850646 |
Christos Tziotzios1, Christos Petridis2, Nick Dand2, Chrysanthi Ainali3, Jake R Saklatvala2, Venu Pullabhatla4, Alexandros Onoufriadis3, Rashida Pramanik4, David Baudry3, Sang Hyuck Lee5, Kristie Wood4, Lu Liu6, Seth Seegobin3, Gregory A Michelotti7, Su M Lwin3, Evangelos A A Christou3, Charles J Curtis4, Emanuele de Rinaldis4, Alka Saxena4, Susan Holmes8, Matthew Harries9, Ioulios Palamaras10, Fiona Cunningham8, Gregory Parkins8, Manjit Kaur11, Paul Farrant12, Andrew McDonagh13, Andrew Messenger13, Jennifer Jones14, Victoria Jolliffe15, Iaisha Ali16, Michael Ardern-Jones17, Charles Mitchell18, Nigel Burrows19, Ravinder Atkar19, Cedric Banfield20, Anton Alexandroff21, Caroline Champagne22, Hywel L Cooper18, Sergio Vañó-Galván23, Ana Maria Molina-Ruiz24, Nerea Ormaechea Perez25, Girish K Patel26, Abby Macbeth27, Melanie Page27, Alyson Bryden28, Megan Mowbray29, Shyamal Wahie30, Keith Armstrong31, Nicola Cooke32, Mark Goodfield33, Irene Man34, David de Berker35, Giles Dunnill35, Anita Takwale36, Archana Rao37, Tee-Wei Siah38, Rodney Sinclair39, Martin S Wade40, Ncoza C Dlova41, Jane Setterfield3, Fiona Lewis3, Kapil Bhargava3, Niall Kirkpatrick42, Xavier Estivill43, Catherine M Stefanato44, Carsten Flohr3, Timothy Spector45, Fiona M Watt46, Catherine H Smith3, Jonathan N Barker3, David A Fenton3, Michael A Simpson2, John A McGrath47.
Abstract
Frontal fibrosing alopecia (FFA) is a recently described inflammatory and scarring type of hair loss affecting almost exclusively women. Despite a dramatic recent increase in incidence the aetiopathogenesis of FFA remains unknown. We undertake genome-wide association studies in females from a UK cohort, comprising 844 cases and 3,760 controls, a Spanish cohort of 172 cases and 385 controls, and perform statistical meta-analysis. We observe genome-wide significant association with FFA at four genomic loci: 2p22.2, 6p21.1, 8q24.22 and 15q2.1. Within the 6p21.1 locus, fine-mapping indicates that the association is driven by the HLA-B*07:02 allele. At 2p22.1, we implicate a putative causal missense variant in CYP1B1, encoding the homonymous xenobiotic- and hormone-processing enzyme. Transcriptomic analysis of affected scalp tissue highlights overrepresentation of transcripts encoding components of innate and adaptive immune response pathways. These findings provide insight into disease pathogenesis and characterise FFA as a genetically predisposed immuno-inflammatory disorder driven by HLA-B*07:02.Entities:
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Year: 2019 PMID: 30850646 PMCID: PMC6408457 DOI: 10.1038/s41467-019-09117-w
Source DB: PubMed Journal: Nat Commun ISSN: 2041-1723 Impact factor: 14.919
Fig. 1Clinical features of frontal fibrosing alopecia. Scalp with frontal hairline recession (a) involving the temporal areas bilaterally (b), as well as eyebrows (c). Histopathology (d) shows two hair follicles with focal interface changes, and a moderately dense perifollicular lymphoid cell infiltrate with perifollicular fibrosis, characteristic of FFA (×200)
Genome-wide significant loci for UK, Spain and meta-analysis
| UK cohort | Spanish cohort | Meta-analysis | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Locus | Gene | Position (hg19) | SNP ID | RA | PA | RAF Cases | RAF Controls | OR (95% CI) |
| OR (95% CI) |
| OR (95% CI) |
|
| 2p22.2 | CYP1B1 | 38,298,139 | rs1800440 | T | C | 0.87 | 0.81 | 1.62 (1.38–1.90) | 5.89x10−9 | 1.81 (1.28–2.58) | 0.00090 | 1.65 (1.43–1.91) | 2.44x10−11 |
| 6p21.1 | HLA-B | 31,320,562 | rs2523616 | T | C | 0.47 | 0.19 | 4.69 (4.07–5.40) | 8.52x10−101 | 4.97 (3.52–7.02) | 8.09x10−20 | 4.73 (4.15–5.39) | 7.60x10−119 |
| 8q24.22 | ST3GAL1 | 134,503,229 | rs760327 | G | C | 0.46 | 0.39 | 1.32 (1.18–1.47) | 1.18x10−6 | 1.50 (1.14–1.97) | 0.00357 | 1.34 (1.21–1.49) | 2.15x10−8 |
| 15q26.1 | SEMA4B | 90,734,426 | rs34560261 | T | C | 0.22 | 0.17 | 1.52 (1.32–1.76) | 8.47x10−9 | 1.51 (1.03–2.21) | 0.03257 | 1.52 (1.22–1.74) | 8.12x10−10 |
Each SNP was tested for association by logistic regression using an additive regression model; total N = 5161 biologically independent subjects (Ncases = 1044 and Ncontrols = 4145)
RA risk allele, PA protective allele, RAF risk allele frequency, OR odds ratio, RAF risk allele frequency, CI confidence interval
Fig. 2Manhattan plot showing the P values for the meta-analysis genome-wide association study. Each SNP was tested for association by logistic regression using an additive regression model; the interrupted line indicates the threshold for genome-wide significance (P = 5 × 10−8); the y axis has been collapsed for better illustration of all genomic signals; the continuous line represents the threshold for suggestive significance (P = 1 × 10−5); N = 5161 biologically independent subjects (Ncases = 1044 and Ncontrols = 4145)
Fig. 3Regional plots of lead signals at loci 15q26.1 and 8q24.22. a Regional plot at locus 15q26.1 (rs34560261); and b Regional plot at locus 8q24.22 (rs760327). The blue lines shows the fine-scale recombination rates (right y axis) estimated from individuals in the 1000 Genomes population; genes are highlighted with horizontal lines; the x axis shows the chromosomal position in Mb; variants within the 95% credible set are highlighted in red
Fig. 4Regional plot at locus 2p22.2 and CYP1B1 enzyme structure. a Regional plot of lead signal at locus 2p22.2 demonstrating the lead causal variant (rs1800440); the blue lines shows the fine-scale recombination rates (right y axis) estimated from individuals in the 1000 Genomes population; genes are highlighted with horizontal lines; the x axis shows the chromosomal position in Mb; variants within the 95% credible set are highlighted in red (N = 1, posterior probability = 0.98); b CYP1B1 enzyme structure drawn via the SWISS-MODEL repository with the site affected by the residue change from Asparagine (N) to Serine (S) at position 453 magnified (https://swissmodel.expasy.org/repository)