Literature DB >> 30849376

Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming.

Geoffrey Schiebinger, Jian Shu, Marcin Tabaka, Brian Cleary, Vidya Subramanian, Aryeh Solomon, Joshua Gould, Siyan Liu, Stacie Lin, Peter Berube, Lia Lee, Jenny Chen, Justin Brumbaugh, Philippe Rigollet, Konrad Hochedlinger, Rudolf Jaenisch, Aviv Regev, Eric S Lander.   

Abstract

Year:  2019        PMID： 30849376      PMCID： PMC6615720          DOI： 10.1016/j.cell.2019.02.026

Source DB:  PubMed          Journal:  Cell        ISSN： 0092-8674            Impact factor:   41.582


× No keyword cloud information.
  25 in total

Review 1.  The Pediatric Cell Atlas: Defining the Growth Phase of Human Development at Single-Cell Resolution.

Authors:  Deanne M Taylor; Bruce J Aronow; Kai Tan; Kathrin Bernt; Nathan Salomonis; Casey S Greene; Alina Frolova; Sarah E Henrickson; Andrew Wells; Liming Pei; Jyoti K Jaiswal; Jeffrey Whitsett; Kathryn E Hamilton; Sonya A MacParland; Judith Kelsen; Robert O Heuckeroth; S Steven Potter; Laura A Vella; Natalie A Terry; Louis R Ghanem; Benjamin C Kennedy; Ingo Helbig; Kathleen E Sullivan; Leslie Castelo-Soccio; Arnold Kreigstein; Florian Herse; Martijn C Nawijn; Gerard H Koppelman; Melissa Haendel; Nomi L Harris; Jo Lynne Rokita; Yuanchao Zhang; Aviv Regev; Orit Rozenblatt-Rosen; Jennifer E Rood; Timothy L Tickle; Roser Vento-Tormo; Saif Alimohamed; Monkol Lek; Jessica C Mar; Kathleen M Loomes; David M Barrett; Prech Uapinyoying; Alan H Beggs; Pankaj B Agrawal; Yi-Wen Chen; Amanda B Muir; Lana X Garmire; Scott B Snapper; Javad Nazarian; Steven H Seeholzer; Hossein Fazelinia; Larry N Singh; Robert B Faryabi; Pichai Raman; Noor Dawany; Hongbo Michael Xie; Batsal Devkota; Sharon J Diskin; Stewart A Anderson; Eric F Rappaport; William Peranteau; Kathryn A Wikenheiser-Brokamp; Sarah Teichmann; Douglas Wallace; Tao Peng; Yang-Yang Ding; Man S Kim; Yi Xing; Sek Won Kong; Carsten G Bönnemann; Kenneth D Mandl; Peter S White
Journal:  Dev Cell       Date:  2019-03-28       Impact factor: 12.270

2.  Single-Cell RNA Sequencing Analysis: A Step-by-Step Overview.

Authors:  Shaked Slovin; Annamaria Carissimo; Francesco Panariello; Antonio Grimaldi; Valentina Bouché; Gennaro Gambardella; Davide Cacchiarelli
Journal:  Methods Mol Biol       Date:  2021

3.  Single-Cell Analysis of Human Retina Identifies Evolutionarily Conserved and Species-Specific Mechanisms Controlling Development.

Authors:  Yufeng Lu; Fion Shiau; Wenyang Yi; Suying Lu; Qian Wu; Joel D Pearson; Alyssa Kallman; Suijuan Zhong; Thanh Hoang; Zhentao Zuo; Fangqi Zhao; Mei Zhang; Nicole Tsai; Yan Zhuo; Sheng He; Jun Zhang; Genevieve L Stein-O'Brien; Thomas D Sherman; Xin Duan; Elana J Fertig; Loyal A Goff; Donald J Zack; James T Handa; Tian Xue; Rod Bremner; Seth Blackshaw; Xiaoqun Wang; Brian S Clark
Journal:  Dev Cell       Date:  2020-05-07       Impact factor: 12.270

4.  Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics during Cardiac Reprogramming.

Authors:  Nicole R Stone; Casey A Gifford; Reuben Thomas; Karishma J B Pratt; Kaitlen Samse-Knapp; Tamer M A Mohamed; Ethan M Radzinsky; Amelia Schricker; Lin Ye; Pengzhi Yu; Joke G van Bemmel; Kathryn N Ivey; Katherine S Pollard; Deepak Srivastava
Journal:  Cell Stem Cell       Date:  2019-07-03       Impact factor: 24.633

5.  CellRank for directed single-cell fate mapping.

Authors:  Marius Lange; Volker Bergen; Michal Klein; Manu Setty; Bernhard Reuter; Mostafa Bakhti; Heiko Lickert; Meshal Ansari; Janine Schniering; Herbert B Schiller; Dana Pe'er; Fabian J Theis
Journal:  Nat Methods       Date:  2022-01-13       Impact factor: 28.547

6.  Lineage tracing on transcriptional landscapes links state to fate during differentiation.

Authors:  Caleb Weinreb; Alejo Rodriguez-Fraticelli; Fernando D Camargo; Allon M Klein
Journal:  Science       Date:  2020-01-23       Impact factor: 47.728

Review 7.  Lineage tracing meets single-cell omics: opportunities and challenges.

Authors:  Daniel E Wagner; Allon M Klein
Journal:  Nat Rev Genet       Date:  2020-03-31       Impact factor: 53.242

8.  Identification of a dynamic gene regulatory network required for pluripotency factor-induced reprogramming of mouse fibroblasts and hepatocytes.

Authors:  Maria Papathanasiou; Stefanos A Tsiftsoglou; Alexander P Polyzos; Deppie Papadopoulou; Dimitrios Valakos; Eleftheria Klagkou; Panagiota Karagianni; Maria Pliatska; Iannis Talianidis; Marios Agelopoulos; Dimitris Thanos
Journal:  EMBO J       Date:  2020-10-09       Impact factor: 11.598

9.  Chromosome compartments on the inactive X guide TAD formation independently of transcription during X-reactivation.

Authors:  Moritz Bauer; Enrique Vidal; Eduard Zorita; Nil Üresin; Stefan F Pinter; Guillaume J Filion; Bernhard Payer
Journal:  Nat Commun       Date:  2021-06-09       Impact factor: 14.919

10.  Reconstructed Single-Cell Fate Trajectories Define Lineage Plasticity Windows during Differentiation of Human PSC-Derived Distal Lung Progenitors.

Authors:  Killian Hurley; Jun Ding; Carlos Villacorta-Martin; Michael J Herriges; Anjali Jacob; Marall Vedaie; Konstantinos D Alysandratos; Yuliang L Sun; Chieh Lin; Rhiannon B Werder; Jessie Huang; Andrew A Wilson; Aditya Mithal; Gustavo Mostoslavsky; Irene Oglesby; Ignacio S Caballero; Susan H Guttentag; Farida Ahangari; Naftali Kaminski; Alejo Rodriguez-Fraticelli; Fernando Camargo; Ziv Bar-Joseph; Darrell N Kotton
Journal:  Cell Stem Cell       Date:  2020-01-30       Impact factor: 24.633
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.