Literature DB >> 30847684

Knowledge discovery through chemical space networks: the case of organic electronics.

Christian Kunkel1, Christoph Schober1, Harald Oberhofer2, Karsten Reuter1.   

Abstract

Modern materials discovery and design studies often rely on the computational screening of large databases. Complementing experimental databases, virtual databases are thereby increasingly established through the first-principles calculation of computationally inexpensive, but for a given application, decisive microscopic quantities of the system. These so-called descriptors are calculated for vast numbers of candidate materials. In general, the sheer volume of datapoints generated in such studies precludes an in depth human analysis. To this end, smart visualization techniques, based e.g., on so-called chemical space networks (CSN), have been developed to extract general design rules connecting structural modifications to changes in the target functionality. In this work, we generate and visualize the CSN of possible crystalline organic semiconductors based on an in-house database of > 64,000 molecular crystals that we extracted from the exhaustive Cambridge Structural Database and for which we computed prominent charge-mobility descriptors. Our CSN thereby links clusters of molecular crystals based on the chemical similarity of the scaffolds of their molecular building blocks and thus groups communities of similar molecules. Including each cluster's median descriptor values, the CSN visualization not only reproduces known trends of good organic semiconductors but also allows us to extract general design rules for organic molecular scaffolds. Finally, the local environment of each scaffold in our visualization shows how thoroughly its local chemical space has already been explored synthetically. Of special interest here are those clusters with promising descriptor values, yet with little or no connections in the sampled chemical space, as these offer the most room for scaffold optimization.

Entities:  

Keywords:  Chemical space networks; Materials design; Organic electronics

Year:  2019        PMID: 30847684     DOI: 10.1007/s00894-019-3950-6

Source DB:  PubMed          Journal:  J Mol Model        ISSN: 0948-5023            Impact factor:   1.810


  50 in total

1.  The Cambridge Structural Database: a quarter of a million crystal structures and rising.

Authors:  Frank H Allen
Journal:  Acta Crystallogr B       Date:  2002-05-29

2.  Extended-connectivity fingerprints.

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Journal:  J Chem Inf Model       Date:  2010-05-24       Impact factor: 4.956

3.  Hopping transport in conductive heterocyclic oligomers: reorganization energies and substituent effects.

Authors:  Geoffrey R Hutchison; Mark A Ratner; Tobin J Marks
Journal:  J Am Chem Soc       Date:  2005-02-23       Impact factor: 15.419

4.  Scaffold composition and biological relevance of screening libraries.

Authors:  Anang A Shelat; R Kiplin Guy
Journal:  Nat Chem Biol       Date:  2007-08       Impact factor: 15.040

Review 5.  Network analysis in the social sciences.

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Journal:  Science       Date:  2009-02-13       Impact factor: 47.728

Review 6.  Network pharmacology: the next paradigm in drug discovery.

Authors:  Andrew L Hopkins
Journal:  Nat Chem Biol       Date:  2008-11       Impact factor: 15.040

7.  Structure-activity relationship anatomy by network-like similarity graphs and local structure-activity relationship indices.

Authors:  Mathias Wawer; Lisa Peltason; Nils Weskamp; Andreas Teckentrup; Jürgen Bajorath
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8.  LoFT: similarity-driven multiobjective focused library design.

Authors:  J Robert Fischer; Uta Lessel; Matthias Rarey
Journal:  J Chem Inf Model       Date:  2010-01       Impact factor: 4.956

9.  Toward a rational design of poly(2,7-carbazole) derivatives for solar cells.

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Journal:  J Am Chem Soc       Date:  2007-12-21       Impact factor: 15.419

10.  Tetrathiafulvalene (TTF) derivatives: key building-blocks for switchable processes.

Authors:  David Canevet; Marc Sallé; Guanxin Zhang; Deqing Zhang; Daoben Zhu
Journal:  Chem Commun (Camb)       Date:  2009-03-19       Impact factor: 6.222

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  4 in total

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Journal:  Chem Rev       Date:  2020-06-10       Impact factor: 60.622

2.  Atomic structures and orbital energies of 61,489 crystal-forming organic molecules.

Authors:  Annika Stuke; Christian Kunkel; Dorothea Golze; Milica Todorović; Johannes T Margraf; Karsten Reuter; Patrick Rinke; Harald Oberhofer
Journal:  Sci Data       Date:  2020-02-18       Impact factor: 6.444

3.  Active discovery of organic semiconductors.

Authors:  Christian Kunkel; Johannes T Margraf; Ke Chen; Harald Oberhofer; Karsten Reuter
Journal:  Nat Commun       Date:  2021-04-23       Impact factor: 14.919

4.  Molecular Design Learned from the Natural Product Porphyra-334: Molecular Generation via Chemical Variational Autoencoder versus Database Mining via Similarity Search, A Comparative Study.

Authors:  Yuki Harada; Makoto Hatakeyama; Shuichi Maeda; Qi Gao; Kenichi Koizumi; Yuki Sakamoto; Yuuki Ono; Shinichiro Nakamura
Journal:  ACS Omega       Date:  2022-03-02
  4 in total

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