Literature DB >> 32520531

Big-Data Science in Porous Materials: Materials Genomics and Machine Learning.

Kevin Maik Jablonka1, Daniele Ongari1, Seyed Mohamad Moosavi1, Berend Smit1.   

Abstract

By combining metal nodes with organic linkers we can potentially synthesize millions of possible metal-organic frameworks (MOFs). The fact that we have so many materials opens many exciting avenues but also create new challenges. We simply have too many materials to be processed using conventional, brute force, methods. In this review, we show that having so many materials allows us to use big-data methods as a powerful technique to study these materials and to discover complex correlations. The first part of the review gives an introduction to the principles of big-data science. We show how to select appropriate training sets, survey approaches that are used to represent these materials in feature space, and review different learning architectures, as well as evaluation and interpretation strategies. In the second part, we review how the different approaches of machine learning have been applied to porous materials. In particular, we discuss applications in the field of gas storage and separation, the stability of these materials, their electronic properties, and their synthesis. Given the increasing interest of the scientific community in machine learning, we expect this list to rapidly expand in the coming years.

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Year:  2020        PMID: 32520531      PMCID: PMC7453404          DOI: 10.1021/acs.chemrev.0c00004

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  232 in total

1.  Active learning with support vector machines in the drug discovery process.

Authors:  Manfred K Warmuth; Jun Liao; Gunnar Rätsch; Michael Mathieson; Santosh Putta; Christian Lemmen
Journal:  J Chem Inf Comput Sci       Date:  2003 Mar-Apr

2.  Fast and accurate modeling of molecular atomization energies with machine learning.

Authors:  Matthias Rupp; Alexandre Tkatchenko; Klaus-Robert Müller; O Anatole von Lilienfeld
Journal:  Phys Rev Lett       Date:  2012-01-31       Impact factor: 9.161

3.  Unsupervised word embeddings capture latent knowledge from materials science literature.

Authors:  Vahe Tshitoyan; John Dagdelen; Leigh Weston; Alexander Dunn; Ziqin Rong; Olga Kononova; Kristin A Persson; Gerbrand Ceder; Anubhav Jain
Journal:  Nature       Date:  2019-07-03       Impact factor: 49.962

4.  Geometrical Properties Can Predict CO2 and N2 Adsorption Performance of Metal-Organic Frameworks (MOFs) at Low Pressure.

Authors:  Michael Fernandez; Amanda S Barnard
Journal:  ACS Comb Sci       Date:  2016-04-13       Impact factor: 3.784

5.  A Universal Machine Learning Algorithm for Large-Scale Screening of Materials.

Authors:  George S Fanourgakis; Konstantinos Gkagkas; Emmanuel Tylianakis; George E Froudakis
Journal:  J Am Chem Soc       Date:  2020-02-12       Impact factor: 15.419

6.  In silico screening of carbon-capture materials.

Authors:  Li-Chiang Lin; Adam H Berger; Richard L Martin; Jihan Kim; Joseph A Swisher; Kuldeep Jariwala; Chris H Rycroft; Abhoyjit S Bhown; Michael W Deem; Maciej Haranczyk; Berend Smit
Journal:  Nat Mater       Date:  2012-05-27       Impact factor: 43.841

7.  Chimera: enabling hierarchy based multi-objective optimization for self-driving laboratories.

Authors:  Florian Häse; Loïc M Roch; Alán Aspuru-Guzik
Journal:  Chem Sci       Date:  2018-08-28       Impact factor: 9.825

8.  Learning with Known Operators reduces Maximum Training Error Bounds.

Authors:  Andreas K Maier; Christopher Syben; Bernhard Stimpel; Tobias Würfl; Mathis Hoffmann; Frank Schebesch; Weilin Fu; Leonid Mill; Lasse Kling; Silke Christiansen
Journal:  Nat Mach Intell       Date:  2019-08-09

9.  Accurate and transferable multitask prediction of chemical properties with an atoms-in-molecules neural network.

Authors:  Roman Zubatyuk; Justin S Smith; Jerzy Leszczynski; Olexandr Isayev
Journal:  Sci Adv       Date:  2019-08-09       Impact factor: 14.136

10.  Data-driven design of metal-organic frameworks for wet flue gas CO2 capture.

Authors:  Peter G Boyd; Arunraj Chidambaram; Enrique García-Díez; Christopher P Ireland; Thomas D Daff; Richard Bounds; Andrzej Gładysiak; Pascal Schouwink; Seyed Mohamad Moosavi; M Mercedes Maroto-Valer; Jeffrey A Reimer; Jorge A R Navarro; Tom K Woo; Susana Garcia; Kyriakos C Stylianou; Berend Smit
Journal:  Nature       Date:  2019-12-11       Impact factor: 49.962

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  31 in total

1.  Using collective knowledge to assign oxidation states of metal cations in metal-organic frameworks.

Authors:  Kevin Maik Jablonka; Daniele Ongari; Seyed Mohamad Moosavi; Berend Smit
Journal:  Nat Chem       Date:  2021-07-05       Impact factor: 24.427

Review 2.  Making the collective knowledge of chemistry open and machine actionable.

Authors:  Kevin Maik Jablonka; Luc Patiny; Berend Smit
Journal:  Nat Chem       Date:  2022-04-04       Impact factor: 24.427

Review 3.  Ab Initio Machine Learning in Chemical Compound Space.

Authors:  Bing Huang; O Anatole von Lilienfeld
Journal:  Chem Rev       Date:  2021-08-13       Impact factor: 60.622

Review 4.  Machine Learning Meets with Metal Organic Frameworks for Gas Storage and Separation.

Authors:  Cigdem Altintas; Omer Faruk Altundal; Seda Keskin; Ramazan Yildirim
Journal:  J Chem Inf Model       Date:  2021-04-29       Impact factor: 4.956

5.  Deep learning-based estimation of Flory-Huggins parameter of A-B block copolymers from cross-sectional images of phase-separated structures.

Authors:  Katsumi Hagita; Takeshi Aoyagi; Yuto Abe; Shinya Genda; Takashi Honda
Journal:  Sci Rep       Date:  2021-06-10       Impact factor: 4.379

6.  Discovering Relationships between OSDAs and Zeolites through Data Mining and Generative Neural Networks.

Authors:  Zach Jensen; Soonhyoung Kwon; Daniel Schwalbe-Koda; Cecilia Paris; Rafael Gómez-Bombarelli; Yuriy Román-Leshkov; Avelino Corma; Manuel Moliner; Elsa A Olivetti
Journal:  ACS Cent Sci       Date:  2021-04-16       Impact factor: 14.553

7.  Machine Learning Assisted Prediction of Prognostic Biomarkers Associated With COVID-19, Using Clinical and Proteomics Data.

Authors:  Rahila Sardar; Arun Sharma; Dinesh Gupta
Journal:  Front Genet       Date:  2021-05-20       Impact factor: 4.599

8.  A data-driven perspective on the colours of metal-organic frameworks.

Authors:  Kevin Maik Jablonka; Seyed Mohamad Moosavi; Mehrdad Asgari; Christopher Ireland; Luc Patiny; Berend Smit
Journal:  Chem Sci       Date:  2020-12-28       Impact factor: 9.825

9.  Machine-learning-accelerated multimodal characterization and multiobjective design optimization of natural porous materials.

Authors:  Giulia Lo Dico; Álvaro Peña Nuñez; Verónica Carcelén; Maciej Haranczyk
Journal:  Chem Sci       Date:  2021-06-02       Impact factor: 9.825

10.  Fingerprinting diverse nanoporous materials for optimal hydrogen storage conditions using meta-learning.

Authors:  Yangzesheng Sun; Robert F DeJaco; Zhao Li; Dai Tang; Stephan Glante; David S Sholl; Coray M Colina; Randall Q Snurr; Matthias Thommes; Martin Hartmann; J Ilja Siepmann
Journal:  Sci Adv       Date:  2021-07-21       Impact factor: 14.136

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