Literature DB >> 30840724

Large-scale medical image annotation with crowd-powered algorithms.

Eric Heim1, Tobias Roß1, Alexander Seitel1, Keno März1, Bram Stieltjes2, Matthias Eisenmann1, Johannes Lebert3, Jasmin Metzger4, Gregor Sommer2, Alexander W Sauter2, Fides Regina Schwartz2, Andreas Termer3, Felix Wagner3, Hannes Götz Kenngott3, Lena Maier-Hein1.   

Abstract

Accurate segmentations in medical images are the foundations for various clinical applications. Advances in machine learning-based techniques show great potential for automatic image segmentation, but these techniques usually require a huge amount of accurately annotated reference segmentations for training. The guiding hypothesis of this paper was that crowd-algorithm collaboration could evolve as a key technique in large-scale medical data annotation. As an initial step toward this goal, we evaluated the performance of untrained individuals to detect and correct errors made by three-dimensional (3-D) medical segmentation algorithms. To this end, we developed a multistage segmentation pipeline incorporating a hybrid crowd-algorithm 3-D segmentation algorithm integrated into a medical imaging platform. In a pilot study of liver segmentation using a publicly available dataset of computed tomography scans, we show that the crowd is able to detect and refine inaccurate organ contours with a quality similar to that of experts (engineers with domain knowledge, medical students, and radiologists). Although the crowds need significantly more time for the annotation of a slice, the annotation rate is extremely high. This could render crowdsourcing a key tool for cost-effective large-scale medical image annotation.

Keywords:  crowdsourcing; segmentation; statistical shape models

Year:  2018        PMID: 30840724      PMCID: PMC6129178          DOI: 10.1117/1.JMI.5.3.034002

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  25 in total

1.  How experience and training influence mammography expertise.

Authors:  C F Nodine; H L Kundel; C Mello-Thoms; S P Weinstein; S G Orel; D C Sullivan; E F Conant
Journal:  Acad Radiol       Date:  1999-10       Impact factor: 3.173

2.  Liver and bone window settings for soft-copy interpretation of chest and abdominal CT.

Authors:  S M Pomerantz; C S White; T L Krebs; B Daly; S A Sukumar; F Hooper; E L Siegel
Journal:  AJR Am J Roentgenol       Date:  2000-02       Impact factor: 3.959

3.  The medical imaging interaction toolkit.

Authors:  Ivo Wolf; Marcus Vetter; Ingmar Wegner; Thomas Böttger; Marco Nolden; Max Schöbinger; Mark Hastenteufel; Tobias Kunert; Hans-Peter Meinzer
Journal:  Med Image Anal       Date:  2005-12       Impact factor: 8.545

4.  Incorporating priors on expert performance parameters for segmentation validation and label fusion: a maximum a posteriori STAPLE.

Authors:  Olivier Commowick; Simon K Warfield
Journal:  Med Image Comput Comput Assist Interv       Date:  2010

5.  A shape-guided deformable model with evolutionary algorithm initialization for 3D soft tissue segmentation.

Authors:  Tobias Heimann; Sascha Münzing; Hans-Peter Meinzer; Ivo Wolf
Journal:  Inf Process Med Imaging       Date:  2007

Review 6.  Statistical shape models for 3D medical image segmentation: a review.

Authors:  Tobias Heimann; Hans-Peter Meinzer
Journal:  Med Image Anal       Date:  2009-05-27       Impact factor: 8.545

7.  Entangled decision forests and their application for semantic segmentation of CT images.

Authors:  Albert Montillo; Jamie Shotton; John Winn; Juan Eugenio Iglesias; Dimitri Metaxas; Antonio Criminisi
Journal:  Inf Process Med Imaging       Date:  2011

8.  Strategies for improved interpretation of computer-aided detections for CT colonography utilizing distributed human intelligence.

Authors:  Matthew T McKenna; Shijun Wang; Tan B Nguyen; Joseph E Burns; Nicholas Petrick; Ronald M Summers
Journal:  Med Image Anal       Date:  2012-05-03       Impact factor: 8.545

Review 9.  OsiriX: an open-source software for navigating in multidimensional DICOM images.

Authors:  Antoine Rosset; Luca Spadola; Osman Ratib
Journal:  J Digit Imaging       Date:  2004-06-29       Impact factor: 4.056

10.  Comparison and evaluation of methods for liver segmentation from CT datasets.

Authors:  Tobias Heimann; Bram van Ginneken; Martin A Styner; Yulia Arzhaeva; Volker Aurich; Christian Bauer; Andreas Beck; Christoph Becker; Reinhard Beichel; György Bekes; Fernando Bello; Gerd Binnig; Horst Bischof; Alexander Bornik; Peter M M Cashman; Ying Chi; Andrés Cordova; Benoit M Dawant; Márta Fidrich; Jacob D Furst; Daisuke Furukawa; Lars Grenacher; Joachim Hornegger; Dagmar Kainmüller; Richard I Kitney; Hidefumi Kobatake; Hans Lamecker; Thomas Lange; Jeongjin Lee; Brian Lennon; Rui Li; Senhu Li; Hans-Peter Meinzer; Gábor Nemeth; Daniela S Raicu; Anne-Mareike Rau; Eva M van Rikxoort; Mikaël Rousson; László Rusko; Kinda A Saddi; Günter Schmidt; Dieter Seghers; Akinobu Shimizu; Pieter Slagmolen; Erich Sorantin; Grzegorz Soza; Ruchaneewan Susomboon; Jonathan M Waite; Andreas Wimmer; Ivo Wolf
Journal:  IEEE Trans Med Imaging       Date:  2009-02-10       Impact factor: 10.048

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  4 in total

1.  Fully Automated Wound Tissue Segmentation Using Deep Learning on Mobile Devices: Cohort Study.

Authors:  Jose Luis Ramirez-GarciaLuna; Robert D J Fraser; Dhanesh Ramachandram; Mario Aurelio Martínez-Jiménez; Jesus E Arriaga-Caballero; Justin Allport
Journal:  JMIR Mhealth Uhealth       Date:  2022-04-22       Impact factor: 4.773

2.  Millimeter-Level Plant Disease Detection From Aerial Photographs via Deep Learning and Crowdsourced Data.

Authors:  Tyr Wiesner-Hanks; Harvey Wu; Ethan Stewart; Chad DeChant; Nicholas Kaczmar; Hod Lipson; Michael A Gore; Rebecca J Nelson
Journal:  Front Plant Sci       Date:  2019-12-12       Impact factor: 5.753

3.  Preparing Medical Imaging Data for Machine Learning.

Authors:  Martin J Willemink; Wojciech A Koszek; Cailin Hardell; Jie Wu; Dominik Fleischmann; Hugh Harvey; Les R Folio; Ronald M Summers; Daniel L Rubin; Matthew P Lungren
Journal:  Radiology       Date:  2020-02-18       Impact factor: 11.105

Review 4.  Crowdsourcing in health and medical research: a systematic review.

Authors:  Cheng Wang; Larry Han; Gabriella Stein; Suzanne Day; Cedric Bien-Gund; Allison Mathews; Jason J Ong; Pei-Zhen Zhao; Shu-Fang Wei; Jennifer Walker; Roger Chou; Amy Lee; Angela Chen; Barry Bayus; Joseph D Tucker
Journal:  Infect Dis Poverty       Date:  2020-01-20       Impact factor: 4.520

  4 in total

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