Literature DB >> 30830465

Towards quality assurance and quality control in untargeted metabolomics studies.

Richard D Beger1, Warwick B Dunn2, Abbas Bandukwala3, Bianca Bethan4, David Broadhurst5, Clary B Clish6, Surendra Dasari7, Leslie Derr8, Annie Evans9, Steve Fischer10, Thomas Flynn3, Thomas Hartung11, David Herrington12, Richard Higashi13, Ping-Ching Hsu14, Christina Jones15, Maureen Kachman16, Helen Karuso17, Gary Kruppa18, Katrice Lippa15, Padma Maruvada19, Jonathan Mosley20, Ioanna Ntai21, Claire O'Donovan22, Mary Playdon23, Daniel Raftery24, Daniel Shaughnessy25, Amanda Souza21, Timothy Spaeder9, Barbara Spalholz23, Fariba Tayyari26, Baljit Ubhi27, Mukesh Verma23, Tilman Walk4, Ian Wilson28, Keren Witkin23, Daniel W Bearden29,30, Krista A Zanetti31.   

Abstract

We describe here the agreed upon first development steps and priority objectives of a community engagement effort to address current challenges in quality assurance (QA) and quality control (QC) in untargeted metabolomic studies. This has included (1) a QA and QC questionnaire responded to by the metabolomics community in 2015 which recommended education of the metabolomics community, development of appropriate standard reference materials and providing incentives for laboratories to apply QA and QC; (2) a 2-day 'Think Tank on Quality Assurance and Quality Control for Untargeted Metabolomic Studies' held at the National Cancer Institute's Shady Grove Campus and (3) establishment of the Metabolomics Quality Assurance and Quality Control Consortium (mQACC) to drive forward developments in a coordinated manner.

Entities:  

Keywords:  Community engagement; Quality assurance (QA); Quality control (QC); Reporting metrics; Test materials

Mesh：

Year:  2019        PMID： 30830465      PMCID： PMC6443086          DOI： 10.1007/s11306-018-1460-7

Source DB:  PubMed          Journal:  Metabolomics        ISSN： 1573-3882            Impact factor:   4.290


  5 in total

Review 1.  Metabolomic Signatures for Drug Response Phenotypes: Pharmacometabolomics Enables Precision Medicine.

Authors:  R Kaddurah-Daouk; R Weinshilboum
Journal:  Clin Pharmacol Ther       Date:  2015-06-04       Impact factor: 6.875

2.  Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950-Metabolites in Frozen Human Plasma.

Authors:  John A Bowden; Alan Heckert; Candice Z Ulmer; Christina M Jones; Jeremy P Koelmel; Laila Abdullah; Linda Ahonen; Yazen Alnouti; Aaron M Armando; John M Asara; Takeshi Bamba; John R Barr; Jonas Bergquist; Christoph H Borchers; Joost Brandsma; Susanne B Breitkopf; Tomas Cajka; Amaury Cazenave-Gassiot; Antonio Checa; Michelle A Cinel; Romain A Colas; Serge Cremers; Edward A Dennis; James E Evans; Alexander Fauland; Oliver Fiehn; Michael S Gardner; Timothy J Garrett; Katherine H Gotlinger; Jun Han; Yingying Huang; Aveline Huipeng Neo; Tuulia Hyötyläinen; Yoshihiro Izumi; Hongfeng Jiang; Houli Jiang; Jiang Jiang; Maureen Kachman; Reiko Kiyonami; Kristaps Klavins; Christian Klose; Harald C Köfeler; Johan Kolmert; Therese Koal; Grielof Koster; Zsuzsanna Kuklenyik; Irwin J Kurland; Michael Leadley; Karen Lin; Krishna Rao Maddipati; Danielle McDougall; Peter J Meikle; Natalie A Mellett; Cian Monnin; M Arthur Moseley; Renu Nandakumar; Matej Oresic; Rainey Patterson; David Peake; Jason S Pierce; Martin Post; Anthony D Postle; Rebecca Pugh; Yunping Qiu; Oswald Quehenberger; Parsram Ramrup; Jon Rees; Barbara Rembiesa; Denis Reynaud; Mary R Roth; Susanne Sales; Kai Schuhmann; Michal Laniado Schwartzman; Charles N Serhan; Andrej Shevchenko; Stephen E Somerville; Lisa St John-Williams; Michal A Surma; Hiroaki Takeda; Rhishikesh Thakare; J Will Thompson; Federico Torta; Alexander Triebl; Martin Trötzmüller; S J Kumari Ubhayasekera; Dajana Vuckovic; Jacquelyn M Weir; Ruth Welti; Markus R Wenk; Craig E Wheelock; Libin Yao; Min Yuan; Xueqing Heather Zhao; Senlin Zhou
Journal:  J Lipid Res       Date:  2017-10-06       Impact factor: 5.922

3.  Effect of sleep deprivation on the human metabolome.

Authors:  Sarah K Davies; Joo Ern Ang; Victoria L Revell; Ben Holmes; Anuska Mann; Francesca P Robertson; Nanyi Cui; Benita Middleton; Katrin Ackermann; Manfred Kayser; Alfred E Thumser; Florence I Raynaud; Debra J Skene
Journal:  Proc Natl Acad Sci U S A       Date:  2014-07-07       Impact factor: 11.205

4.  Metabolic Characterization of a Rare Genetic Variation Within APOC3 and Its Lipoprotein Lipase-Independent Effects.

Authors:  Fotios Drenos; George Davey Smith; Mika Ala-Korpela; Johannes Kettunen; Peter Würtz; Pasi Soininen; Antti J Kangas; Caroline Dale; Debbie A Lawlor; Tom R Gaunt; Juan-Pablo Casas; Nicholas J Timpson
Journal:  Circ Cardiovasc Genet       Date:  2016-04-25

5.  Quality assurance of metabolomics.

Authors:  Mounir Bouhifd; Richard Beger; Thomas Flynn; Lining Guo; Georgina Harris; Helena Hogberg; Rima Kaddurah-Daouk; Hennicke Kamp; Andre Kleensang; Alexandra Maertens; Shelly Odwin-DaCosta; David Pamies; Donald Robertson; Lena Smirnova; Jinchun Sun; Liang Zhao; Thomas Hartung
Journal:  ALTEX       Date:  2015       Impact factor: 6.043
  5 in total
  34 in total

Review 1.  Nutritional Metabolomics in Cancer Epidemiology: Current Trends, Challenges, and Future Directions.

Authors:  Emma E McGee; Rama Kiblawi; Mary C Playdon; A Heather Eliassen
Journal:  Curr Nutr Rep       Date:  2019-09

Review 2.  The application of artificial neural networks in metabolomics: a historical perspective.

Authors:  Kevin M Mendez; David I Broadhurst; Stacey N Reinke
Journal:  Metabolomics       Date:  2019-10-18       Impact factor: 4.290

3.  An Introduction to the Benchmarking and Publications for Non-Targeted Analysis Working Group.

Authors:  Benjamin J Place; Elin M Ulrich; Jonathan K Challis; Alex Chao; Bowen Du; Kristin Favela; Yong-Lai Feng; Christine M Fisher; Piero Gardinali; Alan Hood; Ann M Knolhoff; Andrew D McEachran; Sara L Nason; Seth R Newton; Brian Ng; Jamie Nuñez; Katherine T Peter; Allison L Phillips; Natalia Quinete; Ryan Renslow; Jon R Sobus; Eric M Sussman; Benedikt Warth; Samanthi Wickramasekara; Antony J Williams
Journal:  Anal Chem       Date:  2021-11-29       Impact factor: 6.986

4.  Five Easy Metrics of Data Quality for LC-MS-Based Global Metabolomics.

Authors:  Xinyu Zhang; Jiyang Dong; Daniel Raftery
Journal:  Anal Chem       Date:  2020-09-14       Impact factor: 6.986

5.  Metabolomics to reveal biomarkers and pathways of preterm birth: a systematic review and epidemiologic perspective.

Authors:  R A Carter; K Pan; E W Harville; S McRitchie; S Sumner
Journal:  Metabolomics       Date:  2019-09-10       Impact factor: 4.290

6.  Dissemination and analysis of the quality assurance (QA) and quality control (QC) practices of LC-MS based untargeted metabolomics practitioners.

Authors:  Anne M Evans; Claire O'Donovan; Mary Playdon; Chris Beecher; Richard D Beger; John A Bowden; David Broadhurst; Clary B Clish; Surendra Dasari; Warwick B Dunn; Julian L Griffin; Thomas Hartung; Ping- Ching Hsu; Tao Huan; Judith Jans; Christina M Jones; Maureen Kachman; Andre Kleensang; Matthew R Lewis; María Eugenia Monge; Jonathan D Mosley; Eric Taylor; Fariba Tayyari; Georgios Theodoridis; Federico Torta; Baljit K Ubhi; Dajana Vuckovic
Journal:  Metabolomics       Date:  2020-10-12       Impact factor: 4.290

7.  Closing the gap between in vivo and in vitro omics: using QA/QC to strengthen ex vivo NMR metabolomics.

Authors:  Amith Sadananda Maroli; Robert Powers
Journal:  NMR Biomed       Date:  2021-08-08       Impact factor: 4.044

Review 8.  A strategy for advancing for population-based scientific discovery using the metabolome: the establishment of the Metabolomics Society Metabolomic Epidemiology Task Group.

Authors:  Jessica Lasky-Su; Rachel S Kelly; Craig E Wheelock; David Broadhurst
Journal:  Metabolomics       Date:  2021-05-02       Impact factor: 4.290

9.  Long-Term Metabolomics Reference Material.

Authors:  Goncalo J Gouveia; Amanda O Shaver; Brianna M Garcia; Alison M Morse; Erik C Andersen; Arthur S Edison; Lauren M McIntyre
Journal:  Anal Chem       Date:  2021-06-22       Impact factor: 6.986

10.  Gene-Environment Interactions in Developmental Neurotoxicity: a Case Study of Synergy between Chlorpyrifos and CHD8 Knockout in Human BrainSpheres.

Authors:  Sergio Modafferi; Xiali Zhong; Andre Kleensang; Yohei Murata; Francesca Fagiani; David Pamies; Helena T Hogberg; Vittorio Calabrese; Herbert Lachman; Thomas Hartung; Lena Smirnova
Journal:  Environ Health Perspect       Date:  2021-07-14       Impact factor: 9.031
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.