Literature DB >> 30829332

Preparation of Fungal and Plant Materials for Structural Elucidation Using Dynamic Nuclear Polarization Solid-State NMR.

Alex Kirui1, Malitha C Dickwella Widanage1, Frederic Mentink-Vigier2, Ping Wang3, Xue Kang4, Tuo Wang5.   

Abstract

This protocol shows how uniformly 13C, 15N-labeled fungal materials can be produced and how these soft materials should be proceeded for solid-state NMR and sensitivity-enhanced DNP experiments. The sample processing procedure of plant biomass is also detailed. This method allows the measurement of a series of 1D and 2D 13C-13C/15N correlations spectra, which enables high-resolution structural elucidation of complex biomaterials in their native state, with minimal perturbation. The isotope-labeling can be examined by quantifying the intensity in 1D spectra and the polarization transfer efficiency in 2D correlation spectra. The success of dynamic nuclear polarization (DNP) sample preparation can be evaluated by the sensitivity enhancement factor. Further experiments examining the structural aspects of the polysaccharides and proteins will lead to a model of the three-dimensional architecture. These methods can be modified and adapted to investigate a wide range of carbohydrate-rich materials, including the natural cell walls of plants, fungi, algae and bacteria, as well as synthesized or designed carbohydrate polymers and their complex with other molecules.

Entities:  

Year:  2019        PMID: 30829332     DOI: 10.3791/59152

Source DB:  PubMed          Journal:  J Vis Exp        ISSN: 1940-087X            Impact factor:   1.355


  6 in total

Review 1.  Solid-State NMR Investigations of Extracellular Matrixes and Cell Walls of Algae, Bacteria, Fungi, and Plants.

Authors:  Nader Ghassemi; Alexandre Poulhazan; Fabien Deligey; Frederic Mentink-Vigier; Isabelle Marcotte; Tuo Wang
Journal:  Chem Rev       Date:  2021-12-08       Impact factor: 72.087

Review 2.  Biomolecular complex viewed by dynamic nuclear polarization solid-state NMR spectroscopy.

Authors:  Arnab Chakraborty; Fabien Deligey; Jenny Quach; Frederic Mentink-Vigier; Ping Wang; Tuo Wang
Journal:  Biochem Soc Trans       Date:  2020-06-30       Impact factor: 5.407

3.  Solid-state NMR of unlabeled plant cell walls: high-resolution structural analysis without isotopic enrichment.

Authors:  Wancheng Zhao; Alex Kirui; Fabien Deligey; Frederic Mentink-Vigier; Yihua Zhou; Baocai Zhang; Tuo Wang
Journal:  Biotechnol Biofuels       Date:  2021-01-07       Impact factor: 6.040

4.  A molecular vision of fungal cell wall organization by functional genomics and solid-state NMR.

Authors:  Arnab Chakraborty; Liyanage D Fernando; Wenxia Fang; Malitha C Dickwella Widanage; Pingzhen Wei; Cheng Jin; Thierry Fontaine; Jean-Paul Latgé; Tuo Wang
Journal:  Nat Commun       Date:  2021-11-03       Impact factor: 14.919

5.  Structure of In Vitro-Synthesized Cellulose Fibrils Viewed by Cryo-Electron Tomography and 13C Natural-Abundance Dynamic Nuclear Polarization Solid-State NMR.

Authors:  Fabien Deligey; Mark A Frank; Sung Hyun Cho; Alex Kirui; Frederic Mentink-Vigier; Matthew T Swulius; B Tracy Nixon; Tuo Wang
Journal:  Biomacromolecules       Date:  2022-03-26       Impact factor: 6.978

6.  Solid-state NMR analysis of unlabeled fungal cell walls from Aspergillus and Candida species.

Authors:  Liyanage D Fernando; Malitha C Dickwella Widanage; S Chandra Shekar; Frederic Mentink-Vigier; Ping Wang; Sungsool Wi; Tuo Wang
Journal:  J Struct Biol X       Date:  2022-07-19
  6 in total

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