| Literature DB >> 30804895 |
Tian Qin1,2, Furong Zhang3, Haijian Zhou1,2, Hongyu Ren1, Yinju Du3, Shengnan Liang3, Fei Wang3, Lihong Cheng3, Xuguang Xie3, Aoming Jin4, Yangfeng Wu4, Jinxing Zhao3, Jianguo Xu1,2.
Abstract
Previous studies showed that high concentration of particulate matter (PM) 2.5 and PM10 carried a large number of bacterial and archaeal species, including pathogens and opportunistic pathogens. In this study, pharyngeal swabs from 83 subjects working in an open air farmer's market were sampled before and after exposure to smog with PM2.5 and PM10 levels up to 200 and 300 μg/m3, respectively. Their microbiota were investigated using high-throughput sequencing targeting the V3-V4 regions of the 16S rRNA gene. The genus level phylotypes was increased from 649 to 767 in the post-smog pharyngeal microbiota, of which 142 were new and detected only in the post-smog microbiota. The 142 new genera were traced to sources such as soil, marine, feces, sewage sludge, freshwater, hot springs, and saline lakes. The abundance of the genera Streptococcus, Haemophilus, Moraxella, and Staphylococcus increased in the post-smog pharyngeal microbiota. All six alpha diversity indices and principal component analysis showed that the taxonomic composition of the post-smog pharyngeal microbiota was significantly different to that of the pre-smog pharyngeal microbiota. Redundancy analysis showed that the influences of PM2.5/PM10 exposure and smoking on the taxonomic composition of the pharyngeal microbiota were statistically significant (p < 0.001). Two days of exposure to high concentrations of PM2.5/PM10 changed the pharyngeal microbiota profiles, which may lead to an increase in respiratory diseases. Wearing masks could reduce the effect of high-level PM2.5/PM10 exposure on the pharyngeal microbiota.Entities:
Keywords: PM2.5/PM10; microbiome composition; pharynx; respiratory pathogen; smoking
Year: 2019 PMID: 30804895 PMCID: PMC6379047 DOI: 10.3389/fmicb.2019.00054
Source DB: PubMed Journal: Front Microbiol ISSN: 1664-302X Impact factor: 5.640
Baseline characteristics of the participants in this study.
| Characteristics | Male ( | Female ( |
|---|---|---|
| Age (years) | 37.9 (9.2) | 40.5 (8.9) |
| Smoking | 18 (46%) | 3 (7%) |
| Wore mask | 8 (21%) | 30 (68%) |
| Using antibiotics in past 30 days | 10 (26%) | 9 (20%) |
| Having respiratory symptoms in past two weeks | 6 (15%) | 9 (20%) |
| Working hours | ||
| All day | 23 (59%) | 26 (59%) |
| Morning | 16 (41%) | 18 (41%) |
| Housing type | ||
| Small bungalow | 18 (46%) | 24 (55%) |
| Apartment | 21 (54%) | 20 (45%) |
| Accommodations | ||
| Joint rent | 11 (28%) | 7 (16%) |
| Live with family | 28 (72%) | 37 (84%) |
FIGURE 1The pharyngeal microbiota composition diversity was affected by smog. (A) The pharyngeal microbiota composition diversity at the phylum, family, and genus levels. (B) The top 100 most abundant genera between the pre- and post-smog data. The sizes of the nodes correspond to the relative abundance at the corresponding levels in the cohort. (C) The origins of 142 new bacterial genera detected only in post-smog samples.
FIGURE 2Spearman correlation analysis of influential factors and alpha diversity. ∗p < 0.05, ∗∗p < 0.001.
FIGURE 3Correlation analysis of smog and smoking with the genera of the pharyngeal microbiota. (A) Spearman correlation analysis of influential factors and genera. ∗p < 0.05, ∗∗p < 0.001. (B) The abundance of eleven genera with positive correlations with smog. (C) The abundance of nine genera with positive correlations with smoking.
FIGURE 4The changes in the relative abundance of the 11 genera showing positive correlations with the smog event. (A) The changes in the relative abundance of the 11 genera in each subject. (B) The increased and decreased subject numbers for the 11 genera. (C) The total increase and decrease in the relative abundances of the 11 genera in the 83 subjects.