| Literature DB >> 30795769 |
Qinglu Luo1,2, Shuangquan Ji1, Zhimi Li1, Tao Huang1, Siqin Fan2, Qin Xi3.
Abstract
BACKGROUND: Ultrasound (US) therapy may improve osteoarthritis symptoms. We investigated the effects of US on the synovial fluid (SF) proteome in a rabbit knee osteoarthritis (KOA) model to explore its therapeutic mechanisms.Entities:
Keywords: Osteoarthritis; Proteome; Synovial fluid; Synovial membrane; Ultrasound
Mesh:
Year: 2019 PMID: 30795769 PMCID: PMC6387552 DOI: 10.1186/s12938-019-0637-2
Source DB: PubMed Journal: Biomed Eng Online ISSN: 1475-925X Impact factor: 2.819
Maxquant software parameters
| Item | Value |
|---|---|
| Enzyme | Trypsin |
| Max missed cleavages | 2 |
| Max missed cleavages | 2 |
| Main search | 6 ppm |
| First search | 20 ppm |
| MS/MS tolerance | 20 ppm |
| Fixed modifications | Carbamidomethyl (C) |
| Variable modifications | Oxidation (M), acetyl (protein N-term) |
| Database | See the project report |
| Database pattern | Reverse |
| Peptide FDR | ≤ 0.01 |
| Protein FDR | ≤ 0.01 |
| Time window (match between runs) | 2 min |
| Protein quantification | Razor and unique peptides were used for protein quantification |
| LFQ [ | True |
| LFQ min. ratio count | 1 |
Fig. 1Outline of SF proteome analysis
The protein contents of samples and OD280 contents of peptides in the US and sham US groups
| Group | Volume (μl) | Protein contents (μg/μl) | OD280 (μg/μl) |
|---|---|---|---|
| US group | 200 | 20.72 | 1.30 |
| Sham US group | 200 | 19.67 | 1.58 |
Fig. 2SDS-PAG electropherogram. a Ultrasound, b Control ultrasound
Fig. 3The distribution of sequences with respect to similarity
Fig. 4The GO level distribution of proteins. P process of biological, F function of molecular, C component of cellular
Fig. 5The GO level 2 protein function distribution
Proteins content ratios of the US and sham US groups for significantly differentially expressed proteins
| Protein ID | KO | Map ID | Pathway | Definition name | Ratio A/B | |
|---|---|---|---|---|---|---|
| B7NZM1 | K08757 | ko04975 | Fat digestion and absorption | apolipoprotein A-I | 0.0618 | 0.000121894 |
| G1TKE4 | K14736 | ko04066 | HIF-1 signaling pathway | Transferring | 0.1773 | 1.02272E−06 |
| G1TET0 | K01300 | ko04610 | Complement and coagulation cascades | carboxypeptidase B2 | 0.1939 | 0.016388579 |
| G1SN96 | K01045 | ko00363 | Bisphenol degradation | Arylesterase/paraoxonase | 0.2037 | 0.00047988 |
| G1TR31 | K03910 | ko04610 | Complement and coagulation cascades | alpha-2-macroglobulin | 0.2834 | 0.001349259 |
| G1T0X2 | K03903 | ko04610 | Complement and coagulation cascades | fibrinogen alpha chain | 0.2944 | 2.2664E−05 |
| P30946 | K04079 | ko05215 | Prostate cancer | molecular chaperone HtpG | 8.367 | 0.004786751 |
| Q28888 | K04660 | ko04350 | TGF-beta signaling pathway | Decorin | 11.362 | 0.009282328 |
| P11974 | K00873 | ko00010 | Glycolysis/Gluconeogenesis | pyruvate kinase | 12.006 | 0.011111008 |
| ko05203 | Viral carcinogenesis | |||||
| G1T9I9 | K08753 | ko03320 | PPAR signaling pathway | fatty acid-binding protein 4, adipocyte | 15.174 | 7.13941E−05 |