| Literature DB >> 23937207 |
Daiki Ikeda1, Hiroshi Ageta, Kunihiro Tsuchida, Harumoto Yamada.
Abstract
OBJECTIVE: We performed comprehensive proteomic analyses of articular cartilage by using the isobaric tags for relative and absolute quantitation (iTRAQ) method, and searched for candidate biomarkers for osteoarthritis (OA).Entities:
Mesh:
Substances:
Year: 2013 PMID: 23937207 PMCID: PMC3836424 DOI: 10.3109/1354750X.2013.810667
Source DB: PubMed Journal: Biomarkers ISSN: 1354-750X Impact factor: 2.658
Characteristics of the OA patients and controls in this study.
| No | Sample | Age | Gender | Height | Weight | BMI | K-L Grade | Joint |
|---|---|---|---|---|---|---|---|---|
|
| ||||||||
| 1 | Control | 46 | F | 156 | 55 | 23 | – | – |
| 2 | OA | 59 | F | 150 | 51 | 23 | IV | Hip |
|
| ||||||||
| 1 | Control | 70 | M | 165 | 32.7 | 12 | – | – |
| 2 | Control | 70 | M | 158 | 52.7 | 21 | – | – |
| 3 | Control | 31 | F | 162 | 46 | 17 | – | – |
| 4 | Control | 39 | M | 180 | 81.5 | 25 | – | – |
| 5 | Control | 77 | M | 164 | 52 | 19 | – | – |
| 6 | OA | 75 | M | 159.5 | 70 | 27 | III | Hip |
| 7 | OA | 60 | F | 153 | 49 | 20 | III | Hip |
| 8 | OA | 56 | F | 156.8 | 56.2 | 22 | IV | Hip |
| 9 | OA | 52 | M | 173 | 73.8 | 24 | III | Hip |
| 10 | OA | 63 | F | 159 | 59 | 23 | IV | Hip |
| 11 | OA | 67 | F | 165 | 62.5 | 22 | III | Knee |
| 12 | OA | 74 | F | 147.8 | 54 | 24 | IV | Knee |
| 13 | OA | 87 | F | 151 | 50 | 21 | IV | Knee |
| 14 | OA | 82 | F | 135 | 49.7 | 27 | IV | Knee |
| 15 | OA | 79 | F | 143.7 | 37.7 | 18 | III | Knee |
| 16 | OA | 76 | M | 152 | 52 | 22 | IV | Knee |
| 17 | OA | 75 | F | 153 | 57.4 | 24 | IV | Knee |
| 18 | OA | 77 | F | 146.5 | 64 | 29 | III | Knee |
| 19 | OA | 63 | M | 162 | 69.1 | 26 | III | Knee |
| 20 | OA | 77 | M | 174.3 | 59.7 | 19 | III | Knee |
| 21 | OA | 81 | F | 149 | 50.3 | 22 | II | Knee |
Figure 1.Result of shotgun proteomics based on iTRAQ method. (A) Experimental scheme. (B) Venn diagram showing the ratio of proteins that were included in OA and control cartilages based on the results of iTRAQ method. The diagram defines increased proteins for which OA/control ratio was more than 1.25 and decreased proteins for which the OA/control ratio was less than 0.75.
The articular cartilage proteome.
| No. | Accession | Name | Ratio of OA to control |
|---|---|---|---|
| Top 30 of increased protein in OA cartilage | |||
| 1 | gi|179665 | Complement component C3 | 2.681 |
| 2 | gi|119605141 | Cartilage oligomeric matrix protein, isoform CRA_a | 2.391 |
| 3 | gi|158257468 | Unnamed protein product | 1.911 |
| 4 | gi|158255148 | Unnamed protein product | 1.821 |
| 5 | gi|1000745 | Pro-a2(XI) | 1.791 |
| 6 | gi|62205353 | Matrix Gla protein | 1.758 |
| 7 | gi|193787240 | Unnamed protein product | 1.756 |
| 8 | gi|118573093 | Ovochymase-1 | 1.656 |
| 9 | gi|4220894 | Transcriptional co-activator CRSP70 | 1.652 |
| 10 | gi|50295448 | Platelet phospholipase A2 | 1.633 |
| 11 | gi|194377958 | Unnamed protein product | 1.632 |
| 12 | gi|119220552 | Protein sidekick-1 precursor | 1.623 |
| 13 | gi|119604277 | Pleiotrophin | 1.596 |
| 14 | gi|119587667 | hCG2045237 | 1.573 |
| 15 | gi|940106 | T-cell receptor delta chain | 1.571 |
| 16 | gi|34364882 | Hypothetical protein | 1.527 |
| 17 | gi|49113217 | HHIP-like 2 | 1.524 |
| 18 | gi|348041283 | C-type lectin domain family 3 member A isoform 1 | 1.514 |
| 19 | gi|62420929 | Actin-like protein | 1.503 |
| 20 | gi|118763987 | PRSS3 protein | 1.471 |
| 21 | gi|193786062 | Unnamed protein product | 1.435 |
| 22 | gi|18307851 | Angiogenin | 1.433 |
| 23 | gi|62897225 | Transforming growth factor, beta-induced, 68 kDa variant | 1.425 |
| 24 | gi|68563369 | Solute carrier family 4, anion exchanger, member 1 | 1.414 |
| 25 | gi|21757045 | Unnamed protein product | 1.411 |
| 26 | gi|59806345 | Leukocyte cell-derived chemotaxin-2 precursor | 1.389 |
| 27 | gi|1017427 | Elastic titin | 1.381 |
| 28 | gi|119609838 | Phosphatidylserine receptor, isoform CRA_d | 1.376 |
| 29 | gi|609342 | Nucleophosmin-anaplastic lymphoma kinase fusion protein | 1.369 |
| 30 | gi|21755876 | Unnamed protein product | 1.341 |
| Top 30 of decreased protein in OA cartilage | |||
| 1 | gi|1340142 | Alpha1-antichymotrypsin | 0.402 |
| 2 | gi|13171812 | Immunoglobulin heavy chain variable region | 0.415 |
| 3 | gi|189054134 | Unnamed protein product | 0.554 |
| 4 | gi|67190163 | Proteoglycan 4 isoform A | 0.598 |
| 5 | gi|332164775 | Pyruvate kinase isozymes M1/M2 isoform c | 0.608 |
| 6 | gi|56205585 | S100 calcium binding protein A1 | 0.629 |
| 7 | gi|51094573 | Procollagen C-endopeptidase enhancer | 0.632 |
| 8 | gi|53690154 | Small nuclear ribonucleoprotein polypeptide B | 0.649 |
| 9 | gi|114676256 | Hyaluronan and proteoglycan link protein 4 | 0.661 |
| 10 | gi|296011023 | Stromal cell-derived factor 1 isoform delta | 0.685 |
| 11 | gi|114656687 | Protein disulfide-isomerase A3 isoform 1 | 0.685 |
| 12 | gi|14595132 | Raichu404X | 0.695 |
| 13 | gi|312005 | Small nuclear ribonucleoprotein E | 0.702 |
| 14 | gi|194374101 | Unnamed protein product | 0.702 |
| 15 | gi|119622424 | Aggrecan 1 | 0.722 |
| 16 | gi|189069324 | Unnamed protein product | 0.728 |
| 17 | gi|134254698 | Peroxiredoxin 6 | 0.741 |
| 18 | gi|54303904 | Aging-associated gene 6 protein | 0.754 |
| 19 | gi|62898165 | Biglycan preproprotein variant | 0.759 |
| 20 | gi|119586853 | hCG2044782, isoform CRA_b | 0.761 |
| 21 | gi|32891795 | Clusterin | 0.761 |
| 22 | gi|48146501 | IL17B | 0.762 |
| 23 | gi|662841 | Heat shock protein 27 | 0.771 |
| 24 | gi|194382308 | Unnamed protein product | 0.772 |
| 25 | gi|95115683 | Hemoglobin alpha 1-2 hybrid | 0.774 |
| 26 | gi|215274249 | Fibulin-1 | 0.784 |
| 27 | gi|30354619 | YWHAZ protein | 0.787 |
| 28 | gi|2204207 | Glutathione S-transferase | 0.791 |
| 29 | gi|74761482 | Epithelial splicing regulatory protein 2 | 0.793 |
| 30 | gi|21264602 | Laminin subunit alpha-5 precursor | 0.801 |
The top 30 proteins that were increased or decreased in OA cartilage on iTRAQ method were extracted.
Figure 2.Western blot analysis of LECT2, BAALC and PRDX6. (A) We confirmed the protein expression levels of LECT2, BAALC and PRDX6 in OA and control. Protein gel was stained with SYPRO ruby. (B) Statistical analysis of western blot. Quantities are indicated relative to the average value of each protein level in controls. *p < 0.05, statistically significant differences between OA and control, as determined by Student’s t-test. Error bars indicate SEM. LECT2 (control, n = 5; OA, n = 16; p = 0.005), BAALC (control, n = 5; OA, n = 16; p = 0.051), PRDX6 (control, n = 5; OA, n = 16; p = 0.011). (#) p = 0.051.
Figure 3.Experimental correlation between LECT2 protein levels and Age in OA patients. (A) Age (>65, n = 11; <65, n = 5; LECT2, p = 0.012; BAALC, p = 0.397; PRDX6, p = 0.166). (B) K-L Grade (>IV, n = 8;
Figure 4.The level of LECT2 in control and OA patient at over 65 years of age. We recalculated expression level of LECT2 in OA and control cartilage by excluding the case of under 65 years of age. LECT2 was increased in OA with a significant difference compared with control (Control n = 3, OA n = 11). *p < 0.05, as determined by Student’s t-test. Error bars indicate SEM.