Literature DB >> 30778140

An efficient, step-economical strategy for the design of functional metalloproteins.

Jonathan Rittle1, Mackenzie J Field2, Michael T Green2,3, F Akif Tezcan4,5.   

Abstract

The bottom-up design and construction of functional metalloproteins remains a formidable task in biomolecular design. Although numerous strategies have been used to create new metalloproteins, pre-existing knowledge of the tertiary and quaternary protein structure is often required to generate suitable platforms for robust metal coordination and activity. Here we report an alternative and easily implemented approach (metal active sites by covalent tethering or MASCoT) in which folded protein building blocks are linked by a single disulfide bond to create diverse metal coordination environments within evolutionarily naive protein-protein interfaces. Metalloproteins generated using this strategy uniformly bind a wide array of first-row transition metal ions (MnII, FeII, CoII, NiII, CuII, ZnII and vanadyl) with physiologically relevant thermodynamic affinities (dissociation constants ranging from 700 nM for MnII to 50 fM for CuII). MASCoT readily affords coordinatively unsaturated metal centres-including a penta-His-coordinated non-haem Fe site-and well-defined binding pockets that can accommodate modifications and enable coordination of exogenous ligands such as nitric oxide to the interfacial metal centre.

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Year:  2019        PMID: 30778140      PMCID: PMC6483823          DOI: 10.1038/s41557-019-0218-9

Source DB:  PubMed          Journal:  Nat Chem        ISSN: 1755-4330            Impact factor:   24.427


  65 in total

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2.  Metal binding studies and EPR spectroscopy of the manganese transport regulator MntR.

Authors:  Misha V Golynskiy; William A Gunderson; Michael P Hendrich; Seth M Cohen
Journal:  Biochemistry       Date:  2006-11-22       Impact factor: 3.162

3.  Self-assembly of heme A and heme B in a designed four-helix bundle: implications for a cytochrome c oxidase maquette.

Authors:  B R Gibney; Y Isogai; F Rabanal; K S Reddy; A M Grosset; C C Moser; P L Dutton
Journal:  Biochemistry       Date:  2000-09-12       Impact factor: 3.162

4.  The Crystal Structure of an Integral Membrane Fatty Acid α-Hydroxylase.

Authors:  Guangyu Zhu; Mary Koszelak-Rosenblum; Sara M Connelly; Mark E Dumont; Michael G Malkowski
Journal:  J Biol Chem       Date:  2015-10-28       Impact factor: 5.157

5.  Design and synthesis of multi-haem proteins.

Authors:  D E Robertson; R S Farid; C C Moser; J L Urbauer; S E Mulholland; R Pidikiti; J D Lear; A J Wand; W F DeGrado; P L Dutton
Journal:  Nature       Date:  1994-03-31       Impact factor: 49.962

Review 6.  Metal-directed protein self-assembly.

Authors:  Eric N Salgado; Robert J Radford; F Akif Tezcan
Journal:  Acc Chem Res       Date:  2010-05-18       Impact factor: 22.384

7.  Structural, spectroscopic, and computational study of an octahedral, non-heme [Fe-NO](6-8) Series: [Fe(NO)(cyclam-ac)]2+/+/0.

Authors:  Ricardo García Serres; Craig A Grapperhaus; Eberhard Bothe; Eckhard Bill; Thomas Weyhermüller; Frank Neese; Karl Wieghardt
Journal:  J Am Chem Soc       Date:  2004-04-28       Impact factor: 15.419

8.  Enhancing Mn(II)-Binding and Manganese Peroxidase Activity in a Designed Cytochrome c Peroxidase through Fine-Tuning Secondary-Sphere Interactions.

Authors:  Parisa Hosseinzadeh; Evan N Mirts; Thomas D Pfister; Yi-Gui Gao; Christopher Mayne; Howard Robinson; Emad Tajkhorshid; Yi Lu
Journal:  Biochemistry       Date:  2016-03-02       Impact factor: 3.162

9.  Hydrolytic catalysis and structural stabilization in a designed metalloprotein.

Authors:  Melissa L Zastrow; Anna F A Peacock; Jeanne A Stuckey; Vincent L Pecoraro
Journal:  Nat Chem       Date:  2011-11-27       Impact factor: 24.427

Review 10.  Designing hydrolytic zinc metalloenzymes.

Authors:  Melissa L Zastrow; Vincent L Pecoraro
Journal:  Biochemistry       Date:  2014-02-07       Impact factor: 3.162

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  13 in total

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2.  Nitrite reductase activity within an antiparallel de novo scaffold.

Authors:  Karl J Koebke; Alison G Tebo; Elizabeth C Manickas; Aniruddha Deb; James E Penner-Hahn; Vincent L Pecoraro
Journal:  J Biol Inorg Chem       Date:  2021-09-06       Impact factor: 3.358

Review 3.  Protein Assembly by Design.

Authors:  Jie Zhu; Nicole Avakyan; Albert Kakkis; Alexander M Hoffnagle; Kenneth Han; Yiying Li; Zhiyin Zhang; Tae Su Choi; Youjeong Na; Chung-Jui Yu; F Akif Tezcan
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4.  Redox- and metal-directed structural diversification in designed metalloprotein assemblies.

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Journal:  Chem Commun (Camb)       Date:  2022-06-16       Impact factor: 6.065

5.  Artificial Iron Proteins: Modeling the Active Sites in Non-Heme Dioxygenases.

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Journal:  Inorg Chem       Date:  2020-04-20       Impact factor: 5.165

6.  Uno Ferro, a de novo Designed Protein, Binds Transition Metals with High Affinity and Stabilizes Semiquinone Radical Anion.

Authors:  Jennifer H Yoon; Alona V Kulesha; Zsofia Lengyel-Zhand; Alexander N Volkov; Joel J Rempillo; Areetha D'Souza; Christos Costeas; Cara Chester; Elizabeth R Caselle; Olga V Makhlynets
Journal:  Chemistry       Date:  2019-10-31       Impact factor: 5.236

7.  Recent developments in the construction and applications of platinum-based metallacycles and metallacages via coordination.

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8.  Identifying metal binding amino acids based on backbone geometries as a tool for metalloprotein engineering.

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Journal:  Protein Sci       Date:  2021-04-20       Impact factor: 6.993

9.  Metal-Templated Design of Chemically Switchable Protein Assemblies with High-Affinity Coordination Sites.

Authors:  Albert Kakkis; Derek Gagnon; Julian Esselborn; R David Britt; F Akif Tezcan
Journal:  Angew Chem Int Ed Engl       Date:  2020-09-28       Impact factor: 16.823

10.  Controlled Ligand Exchange Between Ruthenium Organometallic Cofactor Precursors and a Naïve Protein Scaffold Generates Artificial Metalloenzymes Catalysing Transfer Hydrogenation.

Authors:  George S Biggs; Oskar James Klein; Sarah L Maslen; J Mark Skehel; Trevor J Rutherford; Stefan M V Freund; Florian Hollfelder; Sally R Boss; Paul D Barker
Journal:  Angew Chem Int Ed Engl       Date:  2021-03-26       Impact factor: 15.336

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