Literature DB >> 30777481

La proteins couple use of sequence-specific and non-specific binding modes to engage RNA substrates.

Mark A Bayfield1, Jyotsna Vinayak1, Kyra Kerkhofs1, Farnaz Mansouri-Noori1.   

Abstract

La shuttles between the nucleus and cytoplasm where it binds nascent RNA polymerase III (pol III) transcripts and mRNAs, respectively. La protects the 3' end of pol III transcribed RNA precursors, such as pre-tRNAs, through the use of a well-characterized UUU-3'OH binding mode. La proteins are also RNA chaperones, and La-dependent RNA chaperone activity is hypothesized to promote pre-tRNA maturation and translation at cellular and viral internal ribosome entry sites via binding sites distinct from those used for UUU-3'OH recognition. Since the publication of La-UUU-3'OH co-crystal structures, biochemical and genetic experiments have expanded our understanding of how La proteins use UUU-3'OH-independent binding modes to make sequence-independent contacts that can increase affinity for ligands and promote RNA remodeling. Other recent work has also expanded our understanding of how La binds mRNAs through contacts to the poly(A) tail. In this review, we focus on advances in the study of La protein-RNA complex surfaces beyond the description of the La-UUU-3'OH binding mode. We highlight recent advances in the functions of expected canonical nucleic acid interaction surfaces, a heightened appreciation of disordered C-terminal regions, and the nature of sequence-independent RNA determinants in La-RNA target binding. We further discuss how these RNA binding modes may have relevance to the function of the La-related proteins.

Entities:  

Keywords:  La protein; La –related protein; RNA binding protein; RNA chaperone; RNA processing; RNA-protein interaction; precursor tRNA; protein domain; translational control

Year:  2019        PMID: 30777481      PMCID: PMC7928037          DOI: 10.1080/15476286.2019.1582955

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  111 in total

1.  Aberrant nuclear trafficking of La protein leads to disordered processing of associated precursor tRNAs.

Authors:  Robert V Intine; Miroslav Dundr; Tom Misteli; Richard J Maraia
Journal:  Mol Cell       Date:  2002-05       Impact factor: 17.970

2.  La protein is associated with terminal oligopyrimidine mRNAs in actively translating polysomes.

Authors:  Beatrice Cardinali; Claudia Carissimi; Paolo Gravina; Paola Pierandrei-Amaldi
Journal:  J Biol Chem       Date:  2003-07-01       Impact factor: 5.157

3.  Structural analysis of cooperative RNA binding by the La motif and central RRM domain of human La protein.

Authors:  Caterina Alfano; Domenico Sanfelice; Jeff Babon; Geoff Kelly; Amanda Jacks; Stephen Curry; Maria R Conte
Journal:  Nat Struct Mol Biol       Date:  2004-03-07       Impact factor: 15.369

4.  La antigen recognizes and binds to the 3'-oligouridylate tail of a small RNA.

Authors:  M B Mathews; A M Francoeur
Journal:  Mol Cell Biol       Date:  1984-06       Impact factor: 4.272

5.  Mutations in the RNA polymerase III subunit Rpc11p that decrease RNA 3' cleavage activity increase 3'-terminal oligo(U) length and La-dependent tRNA processing.

Authors:  Ying Huang; Robert V Intine; Amy Mozlin; Samuel Hasson; Richard J Maraia
Journal:  Mol Cell Biol       Date:  2005-01       Impact factor: 4.272

6.  LARP-1 promotes oogenesis by repressing fem-3 in the C. elegans germline.

Authors:  Esther Zanin; Anne Pacquelet; Claudia Scheckel; Rafal Ciosk; Monica Gotta
Journal:  J Cell Sci       Date:  2010-07-27       Impact factor: 5.285

Review 7.  xRRM: a new class of RRM found in the telomerase La family protein p65.

Authors:  Mahavir Singh; Charles P Choi; Juli Feigon
Journal:  RNA Biol       Date:  2013-01-17       Impact factor: 4.652

8.  The interactions with Ro60 and La differentially affect nuclear export of hY1 RNA.

Authors:  F H Simons; S A Rutjes; W J van Venrooij; G J Pruijn
Journal:  RNA       Date:  1996-03       Impact factor: 4.942

9.  Analysis of the interaction with the hepatitis C virus mRNA reveals an alternative mode of RNA recognition by the human La protein.

Authors:  Luigi Martino; Simon Pennell; Geoff Kelly; Tam T T Bui; Olga Kotik-Kogan; Stephen J Smerdon; Alex F Drake; Stephen Curry; Maria R Conte
Journal:  Nucleic Acids Res       Date:  2011-10-18       Impact factor: 16.971

10.  Structural insight into the mechanism of stabilization of the 7SK small nuclear RNA by LARP7.

Authors:  Emiko Uchikawa; Kundhavai S Natchiar; Xiao Han; Florence Proux; Pierre Roblin; Elodie Zhang; Alexandre Durand; Bruno P Klaholz; Anne-Catherine Dock-Bregeon
Journal:  Nucleic Acids Res       Date:  2015-03-09       Impact factor: 16.971

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  2 in total

1.  Role of the RNA-binding protein La in cancer pathobiology.

Authors:  Gunhild Sommer; Tilman Heise
Journal:  RNA Biol       Date:  2020-07-20       Impact factor: 4.652

2.  Structure of S. pombe telomerase protein Pof8 C-terminal domain is an xRRM conserved among LARP7 proteins.

Authors:  Ritwika Basu; Catherine D Eichhorn; Ryan Cheng; Robert D Peterson; Juli Feigon
Journal:  RNA Biol       Date:  2020-11-01       Impact factor: 4.652

  2 in total

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