Literature DB >> 33131423

Structure of S. pombe telomerase protein Pof8 C-terminal domain is an xRRM conserved among LARP7 proteins.

Ritwika Basu1, Catherine D Eichhorn1, Ryan Cheng1, Robert D Peterson1, Juli Feigon1.   

Abstract

La-related proteins 7 (LARP7) are a class of RNA chaperones that bind the 3' ends of RNA and are constitutively associated with their specific target RNAs. In metazoa, Larp7 binds to the long non-coding 7SK RNA as a core component of the 7SK RNP, a major regulator of eukaryotic transcription. In the ciliate Tetrahymena the LARP7 protein p65 is a component of telomerase, an essential ribonucleoprotein complex that maintains the telomeric DNA at eukaryotic chromosome ends. p65 is important for the ordered assembly of telomerase RNA (TER) with telomerase reverse transcriptase. Unexpectedly, Schizosaccharomyces pombe Pof8 was recently identified as a LARP7 protein and a core component of fission yeast telomerase essential for biogenesis. LARP7 proteins have a conserved N-terminal La motif and RRM1 (La module) and C-terminal RRM2 with specific RNA substrate recognition attributed to RRM2, first structurally characterized in p65 as an atypical RRM named xRRM. Here we present the X-ray crystal structure and NMR studies of S. pombe Pof8 RRM2. Sequence and structure comparison of Pof8 RRM2 to p65 and human Larp7 xRRMs reveals conserved features for RNA binding with the main variability in the length of the non-canonical helix α3. This study shows that Pof8 has conserved xRRM features, providing insight into TER recognition and the defining characteristics of the xRRM.

Entities:  

Keywords:  7SK; LARP; La protein; NMR; RNA; RRM; X-ray crystallography; telomerase; xRRM

Mesh:

Substances:

Year:  2020        PMID: 33131423      PMCID: PMC8244769          DOI: 10.1080/15476286.2020.1836891

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  70 in total

1.  Structure of the C-terminal domain of human La protein reveals a novel RNA recognition motif coupled to a helical nuclear retention element.

Authors:  Amanda Jacks; Jeff Babon; Geoff Kelly; Ioannis Manolaridis; Peter D Cary; Stephen Curry; Maria R Conte
Journal:  Structure       Date:  2003-07       Impact factor: 5.006

2.  A comprehensive analysis of the La-motif protein superfamily.

Authors:  Cécile Bousquet-Antonelli; Jean-Marc Deragon
Journal:  RNA       Date:  2009-03-19       Impact factor: 4.942

3.  Regulation of polymerase II transcription by 7SK snRNA: two distinct RNA elements direct P-TEFb and HEXIM1 binding.

Authors:  Sylvain Egloff; Elodie Van Herreweghe; Tamás Kiss
Journal:  Mol Cell Biol       Date:  2006-01       Impact factor: 4.272

Review 4.  xRRM: a new class of RRM found in the telomerase La family protein p65.

Authors:  Mahavir Singh; Charles P Choi; Juli Feigon
Journal:  RNA Biol       Date:  2013-01-17       Impact factor: 4.652

Review 5.  Conservation of telomere protein complexes: shuffling through evolution.

Authors:  Benjamin R Linger; Carolyn M Price
Journal:  Crit Rev Biochem Mol Biol       Date:  2009 Nov-Dec       Impact factor: 8.250

6.  Integration, scaling, space-group assignment and post-refinement.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

7.  The Buccaneer software for automated model building. 1. Tracing protein chains.

Authors:  Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-08-19

8.  NMRFAM-SPARKY: enhanced software for biomolecular NMR spectroscopy.

Authors:  Woonghee Lee; Marco Tonelli; John L Markley
Journal:  Bioinformatics       Date:  2014-12-12       Impact factor: 6.937

9.  Structural insight into the mechanism of stabilization of the 7SK small nuclear RNA by LARP7.

Authors:  Emiko Uchikawa; Kundhavai S Natchiar; Xiao Han; Florence Proux; Pierre Roblin; Elodie Zhang; Alexandre Durand; Bruno P Klaholz; Anne-Catherine Dock-Bregeon
Journal:  Nucleic Acids Res       Date:  2015-03-09       Impact factor: 16.971

10.  LARP7 is a stable component of the 7SK snRNP while P-TEFb, HEXIM1 and hnRNP A1 are reversibly associated.

Authors:  Brian J Krueger; Célia Jeronimo; Bibhuti Bhusan Roy; Annie Bouchard; Charlotte Barrandon; Sarah A Byers; Courtney E Searcey; Jeffrey J Cooper; Olivier Bensaude; Eric A Cohen; Benoit Coulombe; David H Price
Journal:  Nucleic Acids Res       Date:  2008-02-16       Impact factor: 16.971

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  4 in total

Review 1.  LARP1 and LARP4: up close with PABP for mRNA 3' poly(A) protection and stabilization.

Authors:  Sandy Mattijssen; Guennadi Kozlov; Bruno D Fonseca; Kalle Gehring; Richard J Maraia
Journal:  RNA Biol       Date:  2021-01-31       Impact factor: 4.652

2.  A putative cap binding protein and the methyl phosphate capping enzyme Bin3/MePCE function in telomerase biogenesis.

Authors:  Diego J Páez-Moscoso; David V Ho; Lili Pan; Katie Hildebrand; Kristi L Jensen; Michaella J Levy; Laurence Florens; Peter Baumann
Journal:  Nat Commun       Date:  2022-02-25       Impact factor: 14.919

3.  Distribution, organization an evolutionary history of La and LARPs in eukaryotes.

Authors:  Jean-Marc Deragon
Journal:  RNA Biol       Date:  2020-03-19       Impact factor: 4.652

4.  The methyl phosphate capping enzyme Bmc1/Bin3 is a stable component of the fission yeast telomerase holoenzyme.

Authors:  Jennifer Porat; Moaine El Baidouri; Jorg Grigull; Jean-Marc Deragon; Mark A Bayfield
Journal:  Nat Commun       Date:  2022-03-11       Impact factor: 14.919

  4 in total

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