Literature DB >> 23328630

xRRM: a new class of RRM found in the telomerase La family protein p65.

Mahavir Singh1, Charles P Choi, Juli Feigon.   

Abstract

Genuine La and La-related proteins group 7 (LARP7) bind to the non-coding RNAs transcribed by RNA polymerase III (RNAPIII), which end in UUU-3'OH. The La motif and RRM1 of these proteins (the La module) cooperate to bind the UUU-3'OH, protecting the RNA from degradation, while other domains may be important for RNA folding or other functions. Among the RNAPIII transcripts is ciliate telomerase RNA (TER). p65, a member of the LARP7 family, is an integral Tetrahymena thermophila telomerase holoenzyme protein required for TER biogenesis and telomerase RNP assembly. p65, together with TER and telomerase reverse transcriptase (TERT), form the Tetrahymena telomerase RNP catalytic core. p65 has an N-terminal domain followed by a La module and a C-terminal domain, which binds to the TER stem 4. We recently showed that the p65 C-terminal domain harbors a cryptic, atypical RRM, which uses a unique mode of single- and double-strand RNA binding and is required for telomerase RNP catalytic core assembly. This domain, which we named xRRM, appears to be present in and unique to genuine La and LARP7 proteins. Here we review the structure of the xRRM, discuss how this domain could recognize diverse substrates of La and LARP7 proteins and discuss the functional implications of the xRRM as an RNP chaperone.

Entities:  

Keywords:  LARP7; La protein; RNA conformation; Tetrahymena; p65; telomerase; telomerase RNA; xRRM2

Mesh:

Substances:

Year:  2013        PMID: 23328630      PMCID: PMC3672277          DOI: 10.4161/rna.23608

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  36 in total

Review 1.  The La protein.

Authors:  Sandra L Wolin; Tommy Cedervall
Journal:  Annu Rev Biochem       Date:  2001-11-09       Impact factor: 23.643

2.  Structure of the C-terminal domain of human La protein reveals a novel RNA recognition motif coupled to a helical nuclear retention element.

Authors:  Amanda Jacks; Jeff Babon; Geoff Kelly; Ioannis Manolaridis; Peter D Cary; Stephen Curry; Maria R Conte
Journal:  Structure       Date:  2003-07       Impact factor: 5.006

3.  Structural analysis of cooperative RNA binding by the La motif and central RRM domain of human La protein.

Authors:  Caterina Alfano; Domenico Sanfelice; Jeff Babon; Geoff Kelly; Amanda Jacks; Stephen Curry; Maria R Conte
Journal:  Nat Struct Mol Biol       Date:  2004-03-07       Impact factor: 15.369

4.  A telomerase holoenzyme protein enhances telomerase RNA assembly with telomerase reverse transcriptase.

Authors:  Ramadevi Prathapam; Keren L Witkin; Catherine M O'Connor; Kathleen Collins
Journal:  Nat Struct Mol Biol       Date:  2005-02-06       Impact factor: 15.369

Review 5.  Biogenesis of telomerase ribonucleoproteins.

Authors:  Emily D Egan; Kathleen Collins
Journal:  RNA       Date:  2012-08-08       Impact factor: 4.942

6.  A novel RNA binding domain in tetrahymena telomerase p65 initiates hierarchical assembly of telomerase holoenzyme.

Authors:  Catherine M O'Connor; Kathleen Collins
Journal:  Mol Cell Biol       Date:  2006-03       Impact factor: 4.272

7.  Structural basis for recognition and sequestration of UUU(OH) 3' temini of nascent RNA polymerase III transcripts by La, a rheumatic disease autoantigen.

Authors:  Marianna Teplova; Yu-Ren Yuan; Anh Tuân Phan; Lucy Malinina; Serge Ilin; Alexei Teplov; Dinshaw J Patel
Journal:  Mol Cell       Date:  2006-01-06       Impact factor: 17.970

8.  La autoantigen is necessary for optimal function of the poliovirus and hepatitis C virus internal ribosome entry site in vivo and in vitro.

Authors:  Mauro Costa-Mattioli; Yuri Svitkin; Nahum Sonenberg
Journal:  Mol Cell Biol       Date:  2004-08       Impact factor: 4.272

9.  Holoenzyme proteins required for the physiological assembly and activity of telomerase.

Authors:  Keren L Witkin; Kathleen Collins
Journal:  Genes Dev       Date:  2004-05-06       Impact factor: 11.361

10.  The Euplotes La motif protein p43 has properties of a telomerase-specific subunit.

Authors:  Stefan Aigner; Jan Postberg; Hans J Lipps; Thomas R Cech
Journal:  Biochemistry       Date:  2003-05-20       Impact factor: 3.162

View more
  20 in total

1.  UHM-ULM interactions in the RBM39-U2AF65 splicing-factor complex.

Authors:  Galina A Stepanyuk; Pedro Serrano; Eigen Peralta; Carol L Farr; Herbert L Axelrod; Michael Geralt; Debanu Das; Hsiu-Ju Chiu; Lukasz Jaroszewski; Ashley M Deacon; Scott A Lesley; Marc-André Elsliger; Adam Godzik; Ian A Wilson; Kurt Wüthrich; Daniel R Salomon; James R Williamson
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-24       Impact factor: 7.652

2.  La proteins couple use of sequence-specific and non-specific binding modes to engage RNA substrates.

Authors:  Mark A Bayfield; Jyotsna Vinayak; Kyra Kerkhofs; Farnaz Mansouri-Noori
Journal:  RNA Biol       Date:  2019-03-18       Impact factor: 4.652

3.  An interdomain bridge influences RNA binding of the human La protein.

Authors:  Stefano A Marrella; Kerene A Brown; Farnaz Mansouri-Noori; Jennifer Porat; Derek J Wilson; Mark A Bayfield
Journal:  J Biol Chem       Date:  2018-12-10       Impact factor: 5.157

Review 4.  Progress in structural studies of telomerase.

Authors:  Edward J Miracco; Jiansen Jiang; Darian D Cash; Juli Feigon
Journal:  Curr Opin Struct Biol       Date:  2014-02-04       Impact factor: 6.809

5.  Structural basis for recognition of human 7SK long noncoding RNA by the La-related protein Larp7.

Authors:  Catherine D Eichhorn; Yuan Yang; Lucas Repeta; Juli Feigon
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-26       Impact factor: 11.205

6.  Stabilize and connect: the role of LARP7 in nuclear non-coding RNA metabolism.

Authors:  Daniele Hasler; Gunter Meister; Utz Fischer
Journal:  RNA Biol       Date:  2020-06-03       Impact factor: 4.652

7.  Dividing and Conquering the Family of RNA Recognition Motifs: A Representative Case Based on hnRNP L.

Authors:  Sarah Loerch; Clara L Kielkopf
Journal:  J Mol Biol       Date:  2015-06-20       Impact factor: 5.469

8.  hLARP7 C-terminal domain contains an xRRM that binds the 3' hairpin of 7SK RNA.

Authors:  Catherine D Eichhorn; Rahul Chug; Juli Feigon
Journal:  Nucleic Acids Res       Date:  2016-09-26       Impact factor: 16.971

Review 9.  The La and related RNA-binding proteins (LARPs): structures, functions, and evolving perspectives.

Authors:  Richard J Maraia; Sandy Mattijssen; Isabel Cruz-Gallardo; Maria R Conte
Journal:  Wiley Interdiscip Rev RNA       Date:  2017-08-07       Impact factor: 9.957

Review 10.  LARP1 and LARP4: up close with PABP for mRNA 3' poly(A) protection and stabilization.

Authors:  Sandy Mattijssen; Guennadi Kozlov; Bruno D Fonseca; Kalle Gehring; Richard J Maraia
Journal:  RNA Biol       Date:  2021-01-31       Impact factor: 4.652

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.