Literature DB >> 30763085

Revealing Fast Structural Dynamics in pH-Responsive Peptides with Time-Resolved X-ray Scattering.

Dolev Rimmerman1, Denis Leshchev1, Darren J Hsu1, Jiyun Hong1, Baxter Abraham2, Robert Henning3, Irina Kosheleva3, Lin X Chen1,4.   

Abstract

Many biomaterials can adapt to changes in the local biological environment (such as pH, temperature, or ionic composition) in order to regulate function or deliver a payload. Such adaptation to environmental perturbation is typically a hierarchical process that begins with a response at a local structural level and then propagates to supramolecular and macromolecular scales. Understanding fast structural dynamics that occur upon perturbation is important for rational design of functional biomaterials. However, few nanosecond time-resolved methods can probe both intra- and intermolecular scales simultaneously with a high structural resolution. Here, we utilize time-resolved X-ray scattering to probe nanosecond to microsecond structural dynamics of poly-l-glutamic acid undergoing protonation via a pH jump initiated by photoexcitation of a photoacid. Our results provide insights into the protonation-induced hierarchical changes in packing of peptide chains, formation of a helical structure, and the associated collapse of the peptide chain.

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Year:  2019        PMID: 30763085      PMCID: PMC6533112          DOI: 10.1021/acs.jpcb.9b00072

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  26 in total

1.  How large is an alpha-helix? Studies of the radii of gyration of helical peptides by small-angle X-ray scattering and molecular dynamics.

Authors:  Bojan Zagrovic; Guha Jayachandran; Ian S Millett; Sebastian Doniach; Vijay S Pande
Journal:  J Mol Biol       Date:  2005-10-21       Impact factor: 5.469

2.  Unusual compactness of a polyproline type II structure.

Authors:  Bojan Zagrovic; Jan Lipfert; Eric J Sorin; Ian S Millett; Wilfred F van Gunsteren; Sebastian Doniach; Vijay S Pande
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-05       Impact factor: 11.205

3.  pH-responsive micelles and vesicles nanocapsules based on polypeptide diblock copolymers.

Authors:  F Chécot; J Rodríguez-Hernández; Y Gnanou; S Lecommandoux
Journal:  Biomol Eng       Date:  2006-06-03

4.  Equilibrium unfolding of the poly(glutamic acid)20 helix.

Authors:  John M Finke; Patricia A Jennings; Jennifer C Lee; José N Onuchic; Jay R Winkler
Journal:  Biopolymers       Date:  2007-06-15       Impact factor: 2.505

5.  Tracking the structural dynamics of proteins in solution using time-resolved wide-angle X-ray scattering.

Authors:  Marco Cammarata; Matteo Levantino; Friedrich Schotte; Philip A Anfinrud; Friederike Ewald; Jungkweon Choi; Antonio Cupane; Michael Wulff; Hyotcherl Ihee
Journal:  Nat Methods       Date:  2008-09-21       Impact factor: 28.547

6.  Direct observation of the multistep helix formation of poly-L-glutamic acids.

Authors:  Tetsunari Kimura; Satoshi Takahashi; Shuji Akiyama; Takanori Uzawa; Koichiro Ishimori; Isao Morishima
Journal:  J Am Chem Soc       Date:  2002-10-02       Impact factor: 15.419

7.  Diffusion coefficient and the secondary structure of poly-L-glutamic acid in aqueous solution.

Authors:  Keiichi Inoue; Naoki Baden; Masahide Terazima
Journal:  J Phys Chem B       Date:  2005-12-01       Impact factor: 2.991

8.  UV resonance Raman determination of polyproline II, extended 2.5(1)-helix, and beta-sheet Psi angle energy landscape in poly-L-lysine and poly-L-glutamic acid.

Authors:  Aleksandr V Mikhonin; Nataliya S Myshakina; Sergei V Bykov; Sanford A Asher
Journal:  J Am Chem Soc       Date:  2005-06-01       Impact factor: 15.419

9.  "Schizophrenic" micellization associated with coil-to-helix transitions based on polypeptide hybrid double hydrophilic rod-coil diblock copolymer.

Authors:  Jingyi Rao; Zhaofeng Luo; Zhishen Ge; Hao Liu; Shiyong Liu
Journal:  Biomacromolecules       Date:  2007-11-03       Impact factor: 6.988

10.  Drug releasing behavior of hybrid micelles containing polypeptide triblock copolymer.

Authors:  Jiaping Lin; Jianqi Zhu; Tao Chen; Shaoliang Lin; Chunhua Cai; Liangshun Zhang; Ying Zhuang; Xiao-Song Wang
Journal:  Biomaterials       Date:  2008-10-05       Impact factor: 12.479

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  7 in total

1.  Integrating solvation shell structure in experimentally driven molecular dynamics using x-ray solution scattering data.

Authors:  Darren J Hsu; Denis Leshchev; Irina Kosheleva; Kevin L Kohlstedt; Lin X Chen
Journal:  J Chem Phys       Date:  2020-05-29       Impact factor: 3.488

2.  Resolving Dynamics in the Ensemble: Finding Paths through Intermediate States and Disordered Protein Structures.

Authors:  Adam K Nijhawan; Arnold M Chan; Darren J Hsu; Lin X Chen; Kevin L Kohlstedt
Journal:  J Phys Chem B       Date:  2021-11-08       Impact factor: 3.466

Review 3.  Time-resolved X-ray scattering studies of proteins.

Authors:  Hyun Sun Cho; Friedrich Schotte; Valentyn Stadnytskyi; Philip Anfinrud
Journal:  Curr Opin Struct Biol       Date:  2021-06-25       Impact factor: 7.786

4.  A setup for millisecond time-resolved X-ray solution scattering experiments at the CoSAXS beamline at the MAX IV Laboratory.

Authors:  Oskar Berntsson; Ann E Terry; Tomás S Plivelic
Journal:  J Synchrotron Radiat       Date:  2022-02-16       Impact factor: 2.616

5.  Unfolding bovine α-lactalbumin with T-jump: Characterizing disordered intermediates via time-resolved x-ray solution scattering and molecular dynamics simulations.

Authors:  Darren J Hsu; Denis Leshchev; Irina Kosheleva; Kevin L Kohlstedt; Lin X Chen
Journal:  J Chem Phys       Date:  2021-03-14       Impact factor: 3.488

6.  Photoinduced Proton-Transfer Reactions for Mild O-H Functionalization of Unreactive Alcohols.

Authors:  Sripati Jana; Zhen Yang; Fang Li; Claire Empel; Junming Ho; Rene M Koenigs
Journal:  Angew Chem Int Ed Engl       Date:  2020-02-25       Impact factor: 15.336

7.  Temperature-jump solution X-ray scattering reveals distinct motions in a dynamic enzyme.

Authors:  Michael C Thompson; Benjamin A Barad; Alexander M Wolff; Hyun Sun Cho; Friedrich Schotte; Daniel M C Schwarz; Philip Anfinrud; James S Fraser
Journal:  Nat Chem       Date:  2019-09-16       Impact factor: 24.427

  7 in total

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