Literature DB >> 16853945

Diffusion coefficient and the secondary structure of poly-L-glutamic acid in aqueous solution.

Keiichi Inoue1, Naoki Baden, Masahide Terazima.   

Abstract

The diffusion coefficients (D) of poly-L-glutamic acid (PLG) at various pHs are investigated by the laser-induced transient-grating method with a new photoreactive probe molecule. The pH dependence of D is compared with that of the helical content of PLG measured by circular dichroism. It is found that the pH dependences of both quantities are very similar. Since the frictions of the translational diffusion of charged and protonated carboxyl groups are found to be similar each other, it is concluded that the conformation of the main polymer chain is the main factor in determining the diffusion process; in other words, the alpha-helix conformation makes the molecular diffusion faster. This result indicates that the conformational change of a protein can be detected by monitoring the diffusion coefficient.

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Year:  2005        PMID: 16853945     DOI: 10.1021/jp052897y

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  14 in total

1.  Conformational changes of PYP monitored by diffusion coefficient: effect of N-terminal alpha-helices.

Authors:  Javaid Shahbaz Khan; Yasushi Imamoto; Miki Harigai; Mikio Kataoka; Masahide Terazima
Journal:  Biophys J       Date:  2006-02-24       Impact factor: 4.033

2.  Tetramer formation kinetics in the signaling state of AppA monitored by time-resolved diffusion.

Authors:  Partha Hazra; Keiichi Inoue; Wouter Laan; Klaas J Hellingwerf; Masahide Terazima
Journal:  Biophys J       Date:  2006-04-28       Impact factor: 4.033

3.  Laser-induced transient grating analysis of dynamics of interaction between sensory rhodopsin II D75N and the HtrII transducer.

Authors:  Keiichi Inoue; Jun Sasaki; John L Spudich; Masahide Terazima
Journal:  Biophys J       Date:  2006-12-22       Impact factor: 4.033

4.  Time-resolved detection of conformational changes in oat phytochrome A: time-dependent diffusion.

Authors:  Takeshi Eitoku; Xristo Zarate; Gennady V Kozhukh; Jeong-Il Kim; Pill-Soon Song; Masahide Terazima
Journal:  Biophys J       Date:  2006-08-25       Impact factor: 4.033

5.  Photoreverse reaction dynamics of octopus rhodopsin.

Authors:  Keiichi Inoue; Motoyuki Tsuda; Masahide Terazima
Journal:  Biophys J       Date:  2007-02-26       Impact factor: 4.033

6.  Structural attributes affecting peptide entrapment in PEO brush layers.

Authors:  Marsha C Lampi; Xiangming Wu; Karl F Schilke; Joseph McGuire
Journal:  Colloids Surf B Biointerfaces       Date:  2013-01-26       Impact factor: 5.268

7.  Revealing Fast Structural Dynamics in pH-Responsive Peptides with Time-Resolved X-ray Scattering.

Authors:  Dolev Rimmerman; Denis Leshchev; Darren J Hsu; Jiyun Hong; Baxter Abraham; Robert Henning; Irina Kosheleva; Lin X Chen
Journal:  J Phys Chem B       Date:  2019-02-27       Impact factor: 2.991

8.  Unfolding of α-helical 20-residue poly-glutamic acid analyzed by multiple runs of canonical molecular dynamics simulations.

Authors:  Naoki Ogasawara; Kota Kasahara; Ryosuke Iwai; Takuya Takahashi
Journal:  PeerJ       Date:  2018-05-15       Impact factor: 2.984

9.  Light-induced conformational changes in full-length Arabidopsis thaliana cryptochrome.

Authors:  Masato Kondoh; Chiaki Shiraishi; Pavel Müller; Margaret Ahmad; Kenichi Hitomi; Elizabeth D Getzoff; Masahide Terazima
Journal:  J Mol Biol       Date:  2011-08-22       Impact factor: 5.469

Review 10.  Time-resolved diffusion reveals photoreactions of BLUF proteins with similar functional domains.

Authors:  Yusuke Nakasone; Masahide Terazima
Journal:  Photochem Photobiol Sci       Date:  2022-04-07       Impact factor: 3.982

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