Literature DB >> 30755526

Kinetics of trifurcated electron flow in the decaheme bacterial proteins MtrC and MtrF.

Xiuyun Jiang1, Bastian Burger1,2, Fruzsina Gajdos1, C Bortolotti3, Zdenek Futera1, Marian Breuer1, Jochen Blumberger4,5.   

Abstract

The bacterium Shewanella oneidensis has evolved a sophisticated electron transfer (ET) machinery to export electrons from the cytosol to extracellular space during extracellular respiration. At the heart of this process are decaheme proteins of the Mtr pathway, MtrC and MtrF, located at the external face of the outer bacterial membrane. Crystal structures have revealed that these proteins bind 10 c-type hemes arranged in the peculiar shape of a staggered cross that trifurcates the electron flow, presumably to reduce extracellular substrates while directing electrons to neighboring multiheme cytochromes at either side along the membrane. Especially intriguing is the design of the heme junctions trifurcating the electron flow: they are made of coplanar and T-shaped heme pair motifs with relatively large and seemingly unfavorable tunneling distances. Here, we use electronic structure calculations and molecular simulations to show that the side chains of the heme rings, in particular the cysteine linkages inserting in the space between coplanar and T-shaped heme pairs, strongly enhance electronic coupling in these two motifs. This results in an [Formula: see text]-fold speedup of ET steps at heme junctions that would otherwise be rate limiting. The predicted maximum electron flux through the solvated proteins is remarkably similar for all possible flow directions, suggesting that MtrC and MtrF shuttle electrons with similar efficiency and reversibly in directions parallel and orthogonal to the outer membrane. No major differences in the ET properties of MtrC and MtrF are found, implying that the different expression levels of the two proteins during extracellular respiration are not related to redox function.

Entities:  

Keywords:  density functional theory; electron transfer; extracellular respiration; heme; molecular dynamics

Mesh:

Substances:

Year:  2019        PMID: 30755526      PMCID: PMC6397555          DOI: 10.1073/pnas.1818003116

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  40 in total

1.  A point-charge force field for molecular mechanics simulations of proteins based on condensed-phase quantum mechanical calculations.

Authors:  Yong Duan; Chun Wu; Shibasish Chowdhury; Mathew C Lee; Guoming Xiong; Wei Zhang; Rong Yang; Piotr Cieplak; Ray Luo; Taisung Lee; James Caldwell; Junmei Wang; Peter Kollman
Journal:  J Comput Chem       Date:  2003-12       Impact factor: 3.376

Review 2.  Microbial electrosynthesis - revisiting the electrical route for microbial production.

Authors:  Korneel Rabaey; René A Rozendal
Journal:  Nat Rev Microbiol       Date:  2010-10       Impact factor: 60.633

3.  Involvement and specificity of Shewanella oneidensis outer membrane cytochromes in the reduction of soluble and solid-phase terminal electron acceptors.

Authors:  Clemens Bücking; Felix Popp; Sven Kerzenmacher; Johannes Gescher
Journal:  FEMS Microbiol Lett       Date:  2010-03-30       Impact factor: 2.742

4.  Free energies for biological electron transfer from QM/MM calculation: method, application and critical assessment.

Authors:  Jochen Blumberger
Journal:  Phys Chem Chem Phys       Date:  2008-08-11       Impact factor: 3.676

5.  Electrical transport along bacterial nanowires from Shewanella oneidensis MR-1.

Authors:  Mohamed Y El-Naggar; Greg Wanger; Kar Man Leung; Thomas D Yuzvinsky; Gordon Southam; Jun Yang; Woon Ming Lau; Kenneth H Nealson; Yuri A Gorby
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-11       Impact factor: 11.205

6.  The solution structure of a tetraheme cytochrome from Shewanella frigidimarina reveals a novel family structural motif.

Authors:  Vitor B Paixão; Carlos A Salgueiro; Lorraine Brennan; Graeme A Reid; Stephen K Chapman; David L Turner
Journal:  Biochemistry       Date:  2008-10-25       Impact factor: 3.162

7.  Selection of a variant of Geobacter sulfurreducens with enhanced capacity for current production in microbial fuel cells.

Authors:  Hana Yi; Kelly P Nevin; Byoung-Chan Kim; Ashely E Franks; Anna Klimes; Leonard M Tender; Derek R Lovley
Journal:  Biosens Bioelectron       Date:  2009-05-14       Impact factor: 10.618

8.  Crystal structures at atomic resolution reveal the novel concept of "electron-harvesting" as a role for the small tetraheme cytochrome c.

Authors:  David Leys; Terrance E Meyer; Alexandre S Tsapin; Kenneth H Nealson; Michael A Cusanovich; Jozef J Van Beeumen
Journal:  J Biol Chem       Date:  2002-06-21       Impact factor: 5.157

9.  Bacterial manganese reduction and growth with manganese oxide as the sole electron acceptor.

Authors:  C R Myers; K H Nealson
Journal:  Science       Date:  1988-06-03       Impact factor: 47.728

10.  The crystal structure of the pentahaem c-type cytochrome NrfB and characterization of its solution-state interaction with the pentahaem nitrite reductase NrfA.

Authors:  Thomas A Clarke; Jeffrey A Cole; David J Richardson; Andrew M Hemmings
Journal:  Biochem J       Date:  2007-08-15       Impact factor: 3.857

View more
  9 in total

1.  Assessing Possible Mechanisms of Micrometer-Scale Electron Transfer in Heme-Free Geobacter sulfurreducens Pili.

Authors:  Xuyan Ru; Peng Zhang; David N Beratan
Journal:  J Phys Chem B       Date:  2019-06-10       Impact factor: 2.991

2.  Engineering Biological Electron Transfer and Redox Pathways for Nanoparticle Synthesis.

Authors:  James Q Boedicker; Manasi Gangan; Kyle Naughton; Fengjie Zhao; Jeffrey A Gralnick; Mohamed Y El-Naggar
Journal:  Bioelectricity       Date:  2021-06-16

3.  Kinetic model for reversible radical transfer in ribonucleotide reductase.

Authors:  Clorice R Reinhardt; Daniel Konstantinovsky; Alexander V Soudackov; Sharon Hammes-Schiffer
Journal:  Proc Natl Acad Sci U S A       Date:  2022-06-17       Impact factor: 12.779

4.  Single molecule tracking of bacterial cell surface cytochromes reveals dynamics that impact long-distance electron transport.

Authors:  Grace W Chong; Sahand Pirbadian; Yunke Zhao; Lori A Zacharoff; Fabien Pinaud; Mohamed Y El-Naggar
Journal:  Proc Natl Acad Sci U S A       Date:  2022-05-03       Impact factor: 12.779

Review 5.  In-Cell Labeling and Mass Spectrometry for Systems-Level Structural Biology.

Authors:  Juan D Chavez; Helisa H Wippel; Xiaoting Tang; Andrew Keller; James E Bruce
Journal:  Chem Rev       Date:  2021-07-07       Impact factor: 72.087

6.  A 300-fold conductivity increase in microbial cytochrome nanowires due to temperature-induced restructuring of hydrogen bonding networks.

Authors:  Peter J Dahl; Sophia M Yi; Yangqi Gu; Atanu Acharya; Catharine Shipps; Jens Neu; J Patrick O'Brien; Uriel N Morzan; Subhajyoti Chaudhuri; Matthew J Guberman-Pfeffer; Dennis Vu; Sibel Ebru Yalcin; Victor S Batista; Nikhil S Malvankar
Journal:  Sci Adv       Date:  2022-05-11       Impact factor: 14.957

7.  Methemoglobin formation in mutant hemoglobin α chains: electron transfer parameters and rates.

Authors:  Vaibhav A Dixit; Jochen Blumberger; Shivam Kumar Vyas
Journal:  Biophys J       Date:  2021-07-13       Impact factor: 3.699

8.  Coherent Electron Transport across a 3 nm Bioelectronic Junction Made of Multi-Heme Proteins.

Authors:  Zdenek Futera; Ichiro Ide; Ben Kayser; Kavita Garg; Xiuyun Jiang; Jessica H van Wonderen; Julea N Butt; Hisao Ishii; Israel Pecht; Mordechai Sheves; David Cahen; Jochen Blumberger
Journal:  J Phys Chem Lett       Date:  2020-11-03       Impact factor: 6.475

9.  Cryo-EM structures of the air-oxidized and dithionite-reduced photosynthetic alternative complex III from Roseiflexus castenholzii.

Authors:  Yang Shi; Yueyong Xin; Chao Wang; Robert E Blankenship; Fei Sun; Xiaoling Xu
Journal:  Sci Adv       Date:  2020-07-29       Impact factor: 14.136

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.