Literature DB >> 19239894

The many pathways of RNA degradation.

Jonathan Houseley1, David Tollervey.   

Abstract

From the earliest comparisons of RNA production with steady-state levels, it has been clear that cells transcribe more RNA than they accumulate, implying the existence of active RNA degradation systems. In general, RNA is degraded at the end of its useful life, which is long for a ribosomal RNA but very short for excised introns or spacer fragments, and is closely regulated for most mRNA species. RNA molecules with defects in processing, folding, or assembly with proteins are identified and rapidly degraded by the surveillance machinery. Because RNA degradation is ubiquitous in all cells, it is clear that it must be carefully controlled to accurately recognize target RNAs. How this is achieved is perhaps the most pressing question in the field.

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Year:  2009        PMID: 19239894     DOI: 10.1016/j.cell.2009.01.019

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  461 in total

1.  The human core exosome interacts with differentially localized processive RNases: hDIS3 and hDIS3L.

Authors:  Rafal Tomecki; Maiken S Kristiansen; Søren Lykke-Andersen; Aleksander Chlebowski; Katja M Larsen; Roman J Szczesny; Karolina Drazkowska; Agnieszka Pastula; Jens S Andersen; Piotr P Stepien; Andrzej Dziembowski; Torben Heick Jensen
Journal:  EMBO J       Date:  2010-06-08       Impact factor: 11.598

2.  Replication of avocado sunblotch viroid in the yeast Saccharomyces cerevisiae.

Authors:  Clémentine Delan-Forino; Marie-Christine Maurel; Claire Torchet
Journal:  J Virol       Date:  2011-01-26       Impact factor: 5.103

3.  RiboSys, a high-resolution, quantitative approach to measure the in vivo kinetics of pre-mRNA splicing and 3'-end processing in Saccharomyces cerevisiae.

Authors:  Ross D Alexander; J David Barrass; Beatriz Dichtl; Martin Kos; Tomasz Obtulowicz; Marie-Cecile Robert; Michal Koper; Iwona Karkusiewicz; Luisa Mariconti; David Tollervey; Bernhard Dichtl; Joanna Kufel; Edouard Bertrand; Jean D Beggs
Journal:  RNA       Date:  2010-10-25       Impact factor: 4.942

4.  PRORP proteins support RNase P activity in both organelles and the nucleus in Arabidopsis.

Authors:  Bernard Gutmann; Anthony Gobert; Philippe Giegé
Journal:  Genes Dev       Date:  2012-05-01       Impact factor: 11.361

5.  Coordinated regulation of neuronal mRNA steady-state levels through developmentally controlled intron retention.

Authors:  Karen Yap; Zhao Qin Lim; Piyush Khandelia; Brad Friedman; Eugene V Makeyev
Journal:  Genes Dev       Date:  2012-06-01       Impact factor: 11.361

Review 6.  Novel endoribonucleases as central players in various pathways of eukaryotic RNA metabolism.

Authors:  Rafal Tomecki; Andrzej Dziembowski
Journal:  RNA       Date:  2010-07-30       Impact factor: 4.942

7.  Addition of poly(A) and poly(A)-rich tails during RNA degradation in the cytoplasm of human cells.

Authors:  Shimyn Slomovic; Ella Fremder; Raymond H G Staals; Ger J M Pruijn; Gadi Schuster
Journal:  Proc Natl Acad Sci U S A       Date:  2010-04-05       Impact factor: 11.205

8.  Transcriptome-wide stability analysis uncovers LARP4-mediated NFκB1 mRNA stabilization during T cell activation.

Authors:  Yi Tian; Zhouhao Zeng; Xiang Li; Yiyin Wang; Runsen Chen; Sandy Mattijssen; Sergei Gaidamakov; Yuzhang Wu; Richard J Maraia; Weiqun Peng; Jun Zhu
Journal:  Nucleic Acids Res       Date:  2020-09-04       Impact factor: 16.971

9.  Synthesis, Functionalization, and Characterization of Fusogenic Porous Silicon Nanoparticles for Oligonucleotide Delivery.

Authors:  Byungji Kim; Michael J Sailor
Journal:  J Vis Exp       Date:  2019-04-16       Impact factor: 1.355

10.  PD-L1 (B7-H1) Competes with the RNA Exosome to Regulate the DNA Damage Response and Can Be Targeted to Sensitize to Radiation or Chemotherapy.

Authors:  Xinyi Tu; Bo Qin; Yong Zhang; Cheng Zhang; Mohamed Kahila; Somaira Nowsheen; Ping Yin; Jian Yuan; Huadong Pei; Hu Li; Jia Yu; Zhiwang Song; Qin Zhou; Fei Zhao; Jiaqi Liu; Chao Zhang; Haidong Dong; Robert W Mutter; Zhenkun Lou
Journal:  Mol Cell       Date:  2019-04-30       Impact factor: 17.970

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