Literature DB >> 30740642

In silico prediction of prolactin molecules as a tool for equine genomics reproduction.

A Neis1, F S Kremer2, L S Pinto2, P M M Leon3.   

Abstract

The prolactin hormone is involved in several biological functions, although its main role resides on reproduction. As it interferes on fertility changes, studies focused on human health have established a linkage of this hormone to fertility losses. Regarding animal research, there is still a lack of information about the structure of prolactin. In case of horse breeding, prolactin has a particular influence; once there is an individualization of these animals and equines are known for presenting several reproductive disorders. As there is no molecular structure available for the prolactin hormone and receptor, we performed several bioinformatics analyses through prediction and refinement softwares, as well as manual modifications. Aiming to elucidate the first computational structure of both molecules and analyse structural and functional aspects related to these proteins, here we provide the first known equine model for prolactin and prolactin receptor, which obtained high global quality scores in diverse software's for quality assessment. QMEAN overall score obtained for ePrl was (- 4.09) and QMEANbrane for ePrlr was (- 8.45), which proves the structures' reliability. This study will implement another tool in equine genomics in order to give light to interactions of these molecules, structural and functional alterations and therefore help diagnosing fertility problems, contributing in the selection of a high genetic herd.

Entities:  

Keywords:  Bioinformatics; Infertility; Mares; PRL; PRLR

Mesh:

Substances:

Year:  2019        PMID: 30740642     DOI: 10.1007/s11030-018-09914-3

Source DB:  PubMed          Journal:  Mol Divers        ISSN: 1381-1991            Impact factor:   2.943


  37 in total

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Journal:  Bioinformatics       Date:  2000-04       Impact factor: 6.937

2.  Automated protein structure modeling in CASP9 by I-TASSER pipeline combined with QUARK-based ab initio folding and FG-MD-based structure refinement.

Authors:  Dong Xu; Jian Zhang; Ambrish Roy; Yang Zhang
Journal:  Proteins       Date:  2011-08-23

3.  Assessment of CASP7 predictions in the high accuracy template-based modeling category.

Authors:  Randy J Read; Gayatri Chavali
Journal:  Proteins       Date:  2007

4.  I-TASSER: a unified platform for automated protein structure and function prediction.

Authors:  Ambrish Roy; Alper Kucukural; Yang Zhang
Journal:  Nat Protoc       Date:  2010-03-25       Impact factor: 13.491

5.  Assessment of model accuracy estimations in CASP12.

Authors:  Andriy Kryshtafovych; Bohdan Monastyrskyy; Krzysztof Fidelis; Torsten Schwede; Anna Tramontano
Journal:  Proteins       Date:  2017-09-08

6.  Null mutation of the prolactin receptor gene produces multiple reproductive defects in the mouse.

Authors:  C J Ormandy; A Camus; J Barra; D Damotte; B Lucas; H Buteau; M Edery; N Brousse; C Babinet; N Binart; P A Kelly
Journal:  Genes Dev       Date:  1997-01-15       Impact factor: 11.361

7.  Crystal structure of an affinity-matured prolactin complexed to its dimerized receptor reveals the topology of hormone binding site 2.

Authors:  Isabelle Broutin; Jean-Baptiste Jomain; Estelle Tallet; Jan van Agthoven; Bertrand Raynal; Sylviane Hoos; Birthe B Kragelund; Paul A Kelly; Arnaud Ducruix; Patrick England; Vincent Goffin
Journal:  J Biol Chem       Date:  2010-01-06       Impact factor: 5.157

Review 8.  Protein structure prediction: when is it useful?

Authors:  Yang Zhang
Journal:  Curr Opin Struct Biol       Date:  2009-03-25       Impact factor: 6.809

9.  AIDA: ab initio domain assembly server.

Authors:  Dong Xu; Lukasz Jaroszewski; Zhanwen Li; Adam Godzik
Journal:  Nucleic Acids Res       Date:  2014-05-15       Impact factor: 16.971

10.  Mutant prolactin receptor and familial hyperprolactinemia.

Authors:  Paul J Newey; Caroline M Gorvin; Stephen J Cleland; Christian B Willberg; Marcus Bridge; Mohammed Azharuddin; Russell S Drummond; P Anton van der Merwe; Paul Klenerman; Chas Bountra; Rajesh V Thakker
Journal:  N Engl J Med       Date:  2013-11-06       Impact factor: 91.245

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