Literature DB >> 10869041

The PSIPRED protein structure prediction server.

L J McGuffin1, K Bryson, D T Jones.   

Abstract

SUMMARY: The PSIPRED protein structure prediction server allows users to submit a protein sequence, perform a prediction of their choice and receive the results of the prediction both textually via e-mail and graphically via the web. The user may select one of three prediction methods to apply to their sequence: PSIPRED, a highly accurate secondary structure prediction method; MEMSAT 2, a new version of a widely used transmembrane topology prediction method; or GenTHREADER, a sequence profile based fold recognition method. AVAILABILITY: Freely available to non-commercial users at http://globin.bio.warwick.ac.uk/psipred/

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Substances：

Year:  2000        PMID： 10869041     DOI： 10.1093/bioinformatics/16.4.404

Source DB:  PubMed          Journal:  Bioinformatics        ISSN： 1367-4803            Impact factor:   6.937


  1293 in total

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2.  Improved detection of homologous membrane proteins by inclusion of information from topology predictions.

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Journal:  Protein Sci       Date:  2002-03       Impact factor: 6.725

3.  Transcription-defective soxR mutants of Escherichia coli: isolation and in vivo characterization.

Authors:  Monica Chander; Laura Raducha-Grace; Bruce Demple
Journal:  J Bacteriol       Date:  2003-04       Impact factor: 3.490

4.  Probing the structure of falcipain-3, a cysteine protease from Plasmodium falciparum: comparative protein modeling and docking studies.

Authors:  Yogesh A Sabnis; Prashant V Desai; Philip J Rosenthal; Mitchell A Avery
Journal:  Protein Sci       Date:  2003-03       Impact factor: 6.725

5.  Active-site-mutagenesis study of rat liver betaine-homocysteine S-methyltransferase.

Authors:  Beatriz González; Nuria Campillo; Francisco Garrido; María Gasset; Juliana Sanz-Aparicio; María A Pajares
Journal:  Biochem J       Date:  2003-03-15       Impact factor: 3.857

6.  Intrinsic disorder in dynein intermediate chain modulates its interactions with NudE and dynactin.

Authors:  Afua Nyarko; Yujuan Song; Elisar Barbar
Journal:  J Biol Chem       Date:  2012-06-05       Impact factor: 5.157

7.  The glycosyltransferase involved in thurandacin biosynthesis catalyzes both O- and S-glycosylation.

Authors:  Huan Wang; Trent J Oman; Ran Zhang; Chantal V Garcia De Gonzalo; Qi Zhang; Wilfred A van der Donk
Journal:  J Am Chem Soc       Date:  2013-12-16       Impact factor: 15.419

8.  Effect of a mutagenized acyl-ACP thioesterase FATA allele from sunflower with improved activity in tobacco leaves and Arabidopsis seeds.

Authors:  Antonio Javier Moreno-Pérez; Mónica Venegas-Calerón; Fabián E Vaistij; Joaquin J Salas; Tony R Larson; Rafael Garcés; Ian A Graham; Enrique Martínez-Force
Journal:  Planta       Date:  2013-12-11       Impact factor: 4.116

9.  Molecular characterization, modeling, in silico analysis of equine pituitary gonadotropin alpha subunit and docking interaction studies with ganirelix.

Authors:  Anuradha Bhardwaj; Varij Nayan; Parvati Sharma; Sanjay Kumar; Yash Pal; Jitender Singh
Journal:  In Silico Pharmacol       Date:  2017-07-18

Review 10.  Machine learning-enabled discovery and design of membrane-active peptides.

Authors:  Ernest Y Lee; Gerard C L Wong; Andrew L Ferguson
Journal:  Bioorg Med Chem       Date:  2017-07-08       Impact factor: 3.641
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