Literature DB >> 30718901

Genome-wide meta-analysis of depression identifies 102 independent variants and highlights the importance of the prefrontal brain regions.

David M Howard1, Mark J Adams2, Toni-Kim Clarke2, Jonathan D Hafferty2, Jude Gibson2, Masoud Shirali2, Jonathan R I Coleman3,4, Saskia P Hagenaars3,4, Joey Ward5, Eleanor M Wigmore2, Clara Alloza2, Xueyi Shen2, Miruna C Barbu2, Eileen Y Xu2, Heather C Whalley2, Riccardo E Marioni6,7, David J Porteous6,7, Gail Davies6,8, Ian J Deary6,8, Gibran Hemani9, Klaus Berger10, Henning Teismann10, Rajesh Rawal10, Volker Arolt11, Bernhard T Baune12, Udo Dannlowski11, Katharina Domschke13, Chao Tian14, David A Hinds14, Maciej Trzaskowski15, Enda M Byrne15, Stephan Ripke16,17,18, Daniel J Smith5, Patrick F Sullivan19,20,21, Naomi R Wray15, Gerome Breen3,4, Cathryn M Lewis3,4, Andrew M McIntosh2,8.   

Abstract

Major depression is a debilitating psychiatric illness that is typically associated with low mood and anhedonia. Depression has a heritable component that has remained difficult to elucidate with current sample sizes due to the polygenic nature of the disorder. To maximize sample size, we meta-analyzed data on 807,553 individuals (246,363 cases and 561,190 controls) from the three largest genome-wide association studies of depression. We identified 102 independent variants, 269 genes, and 15 genesets associated with depression, including both genes and gene pathways associated with synaptic structure and neurotransmission. An enrichment analysis provided further evidence of the importance of prefrontal brain regions. In an independent replication sample of 1,306,354 individuals (414,055 cases and 892,299 controls), 87 of the 102 associated variants were significant after multiple testing correction. These findings advance our understanding of the complex genetic architecture of depression and provide several future avenues for understanding etiology and developing new treatment approaches.

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Mesh:

Year:  2019        PMID: 30718901      PMCID: PMC6522363          DOI: 10.1038/s41593-018-0326-7

Source DB:  PubMed          Journal:  Nat Neurosci        ISSN: 1097-6256            Impact factor:   28.771


  70 in total

1.  Genetic epidemiology of major depression: review and meta-analysis.

Authors:  P F Sullivan; M C Neale; K S Kendler
Journal:  Am J Psychiatry       Date:  2000-10       Impact factor: 18.112

2.  LD Score regression distinguishes confounding from polygenicity in genome-wide association studies.

Authors:  Brendan K Bulik-Sullivan; Po-Ru Loh; Hilary K Finucane; Stephan Ripke; Jian Yang; Nick Patterson; Mark J Daly; Alkes L Price; Benjamin M Neale
Journal:  Nat Genet       Date:  2015-02-02       Impact factor: 38.330

3.  Skeletal muscle PGC-1α1 modulates kynurenine metabolism and mediates resilience to stress-induced depression.

Authors:  Leandro Z Agudelo; Teresa Femenía; Funda Orhan; Margareta Porsmyr-Palmertz; Michel Goiny; Vicente Martinez-Redondo; Jorge C Correia; Manizheh Izadi; Maria Bhat; Ina Schuppe-Koistinen; Amanda T Pettersson; Duarte M S Ferreira; Anna Krook; Romain Barres; Juleen R Zierath; Sophie Erhardt; Maria Lindskog; Jorge L Ruas
Journal:  Cell       Date:  2014-09-25       Impact factor: 41.582

4.  A genome-wide association study of depressive symptoms.

Authors:  Karin Hek; Ayse Demirkan; Jari Lahti; Antonio Terracciano; Alexander Teumer; Cornelia M van Duijn; Hans J Grabe; Lenore J Launer; Kathryn L Lunetta; Thomas H Mosley; Anne B Newman; Henning Tiemeier; Joanne Murabito; Marilyn C Cornelis; Najaf Amin; Erin Bakshis; Jens Baumert; Jingzhong Ding; Yongmei Liu; Kristin Marciante; Osorio Meirelles; Michael A Nalls; Yan V Sun; Nicole Vogelzangs; Lei Yu; Stefania Bandinelli; Emelia J Benjamin; David A Bennett; Dorret Boomsma; Alessandra Cannas; Laura H Coker; Eco de Geus; Philip L De Jager; Ana V Diez-Roux; Shaun Purcell; Frank B Hu; Eric B Rimma; David J Hunter; Majken K Jensen; Gary Curhan; Kenneth Rice; Alan D Penman; Jerome I Rotter; Nona Sotoodehnia; Rebecca Emeny; Johan G Eriksson; Denis A Evans; Luigi Ferrucci; Myriam Fornage; Vilmundur Gudnason; Albert Hofman; Thomas Illig; Sharon Kardia; Margaret Kelly-Hayes; Karestan Koenen; Peter Kraft; Maris Kuningas; Joseph M Massaro; David Melzer; Antonella Mulas; Cornelis L Mulder; Anna Murray; Ben A Oostra; Aarno Palotie; Brenda Penninx; Astrid Petersmann; Luke C Pilling; Bruce Psaty; Rajesh Rawal; Eric M Reiman; Andrea Schulz; Joshua M Shulman; Andrew B Singleton; Albert V Smith; Angelina R Sutin; André G Uitterlinden; Henry Völzke; Elisabeth Widen; Kristine Yaffe; Alan B Zonderman; Francesco Cucca; Tamara Harris; Karl-Heinz Ladwig; David J Llewellyn; Katri Räikkönen; Toshiko Tanaka
Journal:  Biol Psychiatry       Date:  2013-01-03       Impact factor: 13.382

5.  Lifetime prevalence and age-of-onset distributions of DSM-IV disorders in the National Comorbidity Survey Replication.

Authors:  Ronald C Kessler; Patricia Berglund; Olga Demler; Robert Jin; Kathleen R Merikangas; Ellen E Walters
Journal:  Arch Gen Psychiatry       Date:  2005-06

6.  A mega-analysis of genome-wide association studies for major depressive disorder.

Authors:  Stephan Ripke; Naomi R Wray; Cathryn M Lewis; Steven P Hamilton; Myrna M Weissman; Gerome Breen; Enda M Byrne; Douglas H R Blackwood; Dorret I Boomsma; Sven Cichon; Andrew C Heath; Florian Holsboer; Susanne Lucae; Pamela A F Madden; Nicholas G Martin; Peter McGuffin; Pierandrea Muglia; Markus M Noethen; Brenda P Penninx; Michele L Pergadia; James B Potash; Marcella Rietschel; Danyu Lin; Bertram Müller-Myhsok; Jianxin Shi; Stacy Steinberg; Hans J Grabe; Paul Lichtenstein; Patrik Magnusson; Roy H Perlis; Martin Preisig; Jordan W Smoller; Kari Stefansson; Rudolf Uher; Zoltan Kutalik; Katherine E Tansey; Alexander Teumer; Alexander Viktorin; Michael R Barnes; Thomas Bettecken; Elisabeth B Binder; René Breuer; Victor M Castro; Susanne E Churchill; William H Coryell; Nick Craddock; Ian W Craig; Darina Czamara; Eco J De Geus; Franziska Degenhardt; Anne E Farmer; Maurizio Fava; Josef Frank; Vivian S Gainer; Patience J Gallagher; Scott D Gordon; Sergey Goryachev; Magdalena Gross; Michel Guipponi; Anjali K Henders; Stefan Herms; Ian B Hickie; Susanne Hoefels; Witte Hoogendijk; Jouke Jan Hottenga; Dan V Iosifescu; Marcus Ising; Ian Jones; Lisa Jones; Tzeng Jung-Ying; James A Knowles; Isaac S Kohane; Martin A Kohli; Ania Korszun; Mikael Landen; William B Lawson; Glyn Lewis; Donald Macintyre; Wolfgang Maier; Manuel Mattheisen; Patrick J McGrath; Andrew McIntosh; Alan McLean; Christel M Middeldorp; Lefkos Middleton; Grant M Montgomery; Shawn N Murphy; Matthias Nauck; Willem A Nolen; Dale R Nyholt; Michael O'Donovan; Högni Oskarsson; Nancy Pedersen; William A Scheftner; Andrea Schulz; Thomas G Schulze; Stanley I Shyn; Engilbert Sigurdsson; Susan L Slager; Johannes H Smit; Hreinn Stefansson; Michael Steffens; Thorgeir Thorgeirsson; Federica Tozzi; Jens Treutlein; Manfred Uhr; Edwin J C G van den Oord; Gerard Van Grootheest; Henry Völzke; Jeffrey B Weilburg; Gonneke Willemsen; Frans G Zitman; Benjamin Neale; Mark Daly; Douglas F Levinson; Patrick F Sullivan
Journal:  Mol Psychiatry       Date:  2012-04-03       Impact factor: 15.992

7.  Identification of 15 genetic loci associated with risk of major depression in individuals of European descent.

Authors:  Craig L Hyde; Michael W Nagle; Chao Tian; Xing Chen; Sara A Paciga; Jens R Wendland; Joyce Y Tung; David A Hinds; Roy H Perlis; Ashley R Winslow
Journal:  Nat Genet       Date:  2016-08-01       Impact factor: 38.330

8.  The MR-Base platform supports systematic causal inference across the human phenome.

Authors:  Gibran Hemani; Jie Zheng; Benjamin Elsworth; Tom R Gaunt; Philip C Haycock; Kaitlin H Wade; Valeriia Haberland; Denis Baird; Charles Laurin; Stephen Burgess; Jack Bowden; Ryan Langdon; Vanessa Y Tan; James Yarmolinsky; Hashem A Shihab; Nicholas J Timpson; David M Evans; Caroline Relton; Richard M Martin; George Davey Smith
Journal:  Elife       Date:  2018-05-30       Impact factor: 8.140

9.  Genome-wide association study of depression phenotypes in UK Biobank identifies variants in excitatory synaptic pathways.

Authors:  David M Howard; Mark J Adams; Masoud Shirali; Toni-Kim Clarke; Riccardo E Marioni; Gail Davies; Jonathan R I Coleman; Clara Alloza; Xueyi Shen; Miruna C Barbu; Eleanor M Wigmore; Jude Gibson; Saskia P Hagenaars; Cathryn M Lewis; Joey Ward; Daniel J Smith; Patrick F Sullivan; Chris S Haley; Gerome Breen; Ian J Deary; Andrew M McIntosh
Journal:  Nat Commun       Date:  2018-04-16       Impact factor: 14.919

10.  Genome-wide association analyses identify 44 risk variants and refine the genetic architecture of major depression.

Authors:  Naomi R Wray; Stephan Ripke; Manuel Mattheisen; Maciej Trzaskowski; Enda M Byrne; Abdel Abdellaoui; Mark J Adams; Esben Agerbo; Tracy M Air; Till M F Andlauer; Silviu-Alin Bacanu; Marie Bækvad-Hansen; Aartjan F T Beekman; Tim B Bigdeli; Elisabeth B Binder; Douglas R H Blackwood; Julien Bryois; Henriette N Buttenschøn; Jonas Bybjerg-Grauholm; Na Cai; Enrique Castelao; Jane Hvarregaard Christensen; Toni-Kim Clarke; Jonathan I R Coleman; Lucía Colodro-Conde; Baptiste Couvy-Duchesne; Nick Craddock; Gregory E Crawford; Cheynna A Crowley; Hassan S Dashti; Gail Davies; Ian J Deary; Franziska Degenhardt; Eske M Derks; Nese Direk; Conor V Dolan; Erin C Dunn; Thalia C Eley; Nicholas Eriksson; Valentina Escott-Price; Farnush Hassan Farhadi Kiadeh; Hilary K Finucane; Andreas J Forstner; Josef Frank; Héléna A Gaspar; Michael Gill; Paola Giusti-Rodríguez; Fernando S Goes; Scott D Gordon; Jakob Grove; Lynsey S Hall; Eilis Hannon; Christine Søholm Hansen; Thomas F Hansen; Stefan Herms; Ian B Hickie; Per Hoffmann; Georg Homuth; Carsten Horn; Jouke-Jan Hottenga; David M Hougaard; Ming Hu; Craig L Hyde; Marcus Ising; Rick Jansen; Fulai Jin; Eric Jorgenson; James A Knowles; Isaac S Kohane; Julia Kraft; Warren W Kretzschmar; Jesper Krogh; Zoltán Kutalik; Jacqueline M Lane; Yihan Li; Yun Li; Penelope A Lind; Xiaoxiao Liu; Leina Lu; Donald J MacIntyre; Dean F MacKinnon; Robert M Maier; Wolfgang Maier; Jonathan Marchini; Hamdi Mbarek; Patrick McGrath; Peter McGuffin; Sarah E Medland; Divya Mehta; Christel M Middeldorp; Evelin Mihailov; Yuri Milaneschi; Lili Milani; Jonathan Mill; Francis M Mondimore; Grant W Montgomery; Sara Mostafavi; Niamh Mullins; Matthias Nauck; Bernard Ng; Michel G Nivard; Dale R Nyholt; Paul F O'Reilly; Hogni Oskarsson; Michael J Owen; Jodie N Painter; Carsten Bøcker Pedersen; Marianne Giørtz Pedersen; Roseann E Peterson; Erik Pettersson; Wouter J Peyrot; Giorgio Pistis; Danielle Posthuma; Shaun M Purcell; Jorge A Quiroz; Per Qvist; John P Rice; Brien P Riley; Margarita Rivera; Saira Saeed Mirza; Richa Saxena; Robert Schoevers; Eva C Schulte; Ling Shen; Jianxin Shi; Stanley I Shyn; Engilbert Sigurdsson; Grant B C Sinnamon; Johannes H Smit; Daniel J Smith; Hreinn Stefansson; Stacy Steinberg; Craig A Stockmeier; Fabian Streit; Jana Strohmaier; Katherine E Tansey; Henning Teismann; Alexander Teumer; Wesley Thompson; Pippa A Thomson; Thorgeir E Thorgeirsson; Chao Tian; Matthew Traylor; Jens Treutlein; Vassily Trubetskoy; André G Uitterlinden; Daniel Umbricht; Sandra Van der Auwera; Albert M van Hemert; Alexander Viktorin; Peter M Visscher; Yunpeng Wang; Bradley T Webb; Shantel Marie Weinsheimer; Jürgen Wellmann; Gonneke Willemsen; Stephanie H Witt; Yang Wu; Hualin S Xi; Jian Yang; Futao Zhang; Volker Arolt; Bernhard T Baune; Klaus Berger; Dorret I Boomsma; Sven Cichon; Udo Dannlowski; E C J de Geus; J Raymond DePaulo; Enrico Domenici; Katharina Domschke; Tõnu Esko; Hans J Grabe; Steven P Hamilton; Caroline Hayward; Andrew C Heath; David A Hinds; Kenneth S Kendler; Stefan Kloiber; Glyn Lewis; Qingqin S Li; Susanne Lucae; Pamela F A Madden; Patrik K Magnusson; Nicholas G Martin; Andrew M McIntosh; Andres Metspalu; Ole Mors; Preben Bo Mortensen; Bertram Müller-Myhsok; Merete Nordentoft; Markus M Nöthen; Michael C O'Donovan; Sara A Paciga; Nancy L Pedersen; Brenda W J H Penninx; Roy H Perlis; David J Porteous; James B Potash; Martin Preisig; Marcella Rietschel; Catherine Schaefer; Thomas G Schulze; Jordan W Smoller; Kari Stefansson; Henning Tiemeier; Rudolf Uher; Henry Völzke; Myrna M Weissman; Thomas Werge; Ashley R Winslow; Cathryn M Lewis; Douglas F Levinson; Gerome Breen; Anders D Børglum; Patrick F Sullivan
Journal:  Nat Genet       Date:  2018-04-26       Impact factor: 38.330

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  420 in total

Review 1.  The Netrin-1/DCC Guidance Cue Pathway as a Molecular Target in Depression: Translational Evidence.

Authors:  Angélica Torres-Berrío; Giovanni Hernandez; Eric J Nestler; Cecilia Flores
Journal:  Biol Psychiatry       Date:  2020-05-11       Impact factor: 13.382

Review 2.  The Bidirectional Relationship of Depression and Inflammation: Double Trouble.

Authors:  Eléonore Beurel; Marisa Toups; Charles B Nemeroff
Journal:  Neuron       Date:  2020-06-17       Impact factor: 17.173

Review 3.  How genome-wide association studies (GWAS) made traditional candidate gene studies obsolete.

Authors:  Laramie E Duncan; Michael Ostacher; Jacob Ballon
Journal:  Neuropsychopharmacology       Date:  2019-04-14       Impact factor: 7.853

4.  Genome-wide Association Study of Creativity Reveals Genetic Overlap With Psychiatric Disorders, Risk Tolerance, and Risky Behaviors.

Authors:  Huijuan Li; Chuyi Zhang; Xin Cai; Lu Wang; Fang Luo; Yina Ma; Ming Li; Xiao Xiao
Journal:  Schizophr Bull       Date:  2020-03-05       Impact factor: 9.306

5.  The laterodorsal tegmentum-ventral tegmental area circuit controls depression-like behaviors by activating ErbB4 in DA neurons.

Authors:  Hongsheng Wang; Wanpeng Cui; Wenbing Chen; Fang Liu; Zhaoqi Dong; Guanglin Xing; Bin Luo; Nannan Gao; Wen-Jun Zou; Kai Zhao; Hongsheng Zhang; Xiao Ren; Zheng Yu; Heath L Robinson; Zhipeng Liu; Wen-Cheng Xiong; Lin Mei
Journal:  Mol Psychiatry       Date:  2021-05-14       Impact factor: 15.992

6.  Dispositional negativity, cognition, and anxiety disorders: An integrative translational neuroscience framework.

Authors:  Juyoen Hur; Melissa D Stockbridge; Andrew S Fox; Alexander J Shackman
Journal:  Prog Brain Res       Date:  2019-04-17       Impact factor: 2.453

7.  Transcriptome-wide association analysis offers novel opportunities for clinical translation of genetic discoveries on mental disorders.

Authors:  Eske M Derks; Eric R Gamazon
Journal:  World Psychiatry       Date:  2020-02       Impact factor: 49.548

8.  Reviewing the genetics of heterogeneity in depression: operationalizations, manifestations and etiologies.

Authors:  Na Cai; Karmel W Choi; Eiko I Fried
Journal:  Hum Mol Genet       Date:  2020-09-30       Impact factor: 6.150

9.  Identifying 5 Common Psychiatric Disorders Associated Chemicals Through Integrative Analysis of Genome-Wide Association Study and Chemical-Gene Interaction Datasets.

Authors:  Shiqiang Cheng; Yan Wen; Mei Ma; Lu Zhang; Li Liu; Xin Qi; Bolun Cheng; Chujun Liang; Ping Li; Om Prakash Kafle; Feng Zhang
Journal:  Schizophr Bull       Date:  2020-04-15       Impact factor: 9.306

10.  Transcriptomic analyses of humans and mice provide insights into depression.

Authors:  Hui-Juan Li; Xi Su; Lu-Wen Zhang; Chu-Yi Zhang; Lu Wang; Wen-Qiang Li; Yong-Feng Yang; Lu-Xian Lv; Ming Li; Xiao Xiao
Journal:  Zool Res       Date:  2020-11-18
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