| Literature DB >> 30717206 |
Nikola Jovanović1, Tatjana Mitrović2, Vladimir J Cvetković3, Svetlana Tošić4, Jelena Vitorović5, Slaviša Stamenković6, Vesna Nikolov7, Aleksandar Kostić8, Nataša Vidović9, Miljan Krstić10, Tatjana Jevtović-Stoimenov11, Dušica Pavlović12.
Abstract
Background and objective: Despite recent advances in treatment, glioblastoma (GBM) remains the most lethal and aggressive brain tumor. A continuous search for a reliable molecular marker establishes the methylation status of the O6-methylguanine-DNA methyltransferase (MGMT) gene promoter as a key prognostic factor in primary glioblastoma. The aim of our study was to screen Serbian patients with primary glioblastoma for an MGMT promoter hypermethylation and to evaluate its associations with overall survival (OS) and sensitivity to temozolomide (TMZ) treatment. Materials and methods: A cohort of 30 Serbian primary glioblastoma patients treated with radiation therapy and chemotherapy were analyzed for MGMT promoter methylation and correlated with clinical data.Entities:
Keywords: MGMT methylation; glioblastoma; methylation-specific polymerase chain reaction (MSP); overall survival; prognosis; temozolomide
Mesh:
Substances:
Year: 2019 PMID: 30717206 PMCID: PMC6409652 DOI: 10.3390/medicina55020034
Source DB: PubMed Journal: Medicina (Kaunas) ISSN: 1010-660X Impact factor: 2.430
List of patients and treatments involved in DNA analysis.
| Type of Therapy | Patient Mark |
|---|---|
| RT + TMZ (Group 1) | 1, 2, 5, 8, 9, 15, 16, 17, 19 and 25 |
| RT + PCV (Group 2) | 4, 7, 10, 12, 18, 22, 23 and 24 |
| RT + BCNU (Group 3) | 3, 6, 11, 13, 14, 20 and 21 |
RT: radiotherapy; TMZ: temozolomide; PCV: procarbazine, lomustine, and vincristine; BCNU: carmustine.
Primer sequences and amplification.
| Gene | Primer Sequence (5’–3’) | Amplicon Size (bp) | References |
|---|---|---|---|
| F: TTTGTGTTTTGATGTTTGTAGGTTTTTGT | 93 | [ | |
| R: AACTCCACACTCTTCCAAAAACAAAACA | |||
| F: TTTCGACGTTCGTAGGTTTTCGC | 81 | [ | |
| R: GCACTCTTCCGAAAACGAAACG | |||
|
| F: GGTTAGGTATAGTGGTTTATATTTGTAATTTTAGTA | 98 | [ |
| R: ATTAACTAAACTAATCTTAAACTCCTAACCTCA |
MGMT: O6-methylguanine-DNA methyltransferase; F: forward primer; R: reverse primer.
Figure 1Determination of the methylation status of MGMT promoter in primary glioblastoma by A methylation-specific polymerase chain reaction (MSP). S: DNA standard 100 bp ladder; K-: negative control; K1: unmethylated human control DNA; K2: unmethylated and bisulfite-converted human control DNA; K3: methylated and bisulfite-converted human control DNA; M: Polymerase chain reaction (PCR) reaction with primers specific for methylated MGMT promoter; U: PCR reaction with primers specific for unmethylated MGMT promoter; PD: primer dimers; 1–25: bisulfite-converted DNA isolated from patients with primary glioblastoma; patients denoted as 1, 2, 5, 8, 9, 15, 16, 17, 19, and 25 were treated with RT+TMZ (defined as Group 1 in Section 2.1); patients marked as 4, 7, 10, 12, 18, 22, 23, and 24 were treated with RT+PCV (defined as Group 2 in Section 2.1); patients designated as 3, 6, 11, 13, 14, 20, and 21 were treated with RT+BCNU (defined as Group 3 in Section 2.1.)
Figure 2Amplification of a part of the ALU element (ALU C4 sequence) was used for the normalization of MSP. S: DNA standard 100 bp ladder; K-: negative control; 1–25: bisulfite-converted DNA isolated from patients with primary glioblastoma.
Clinical characteristics and methylation status of primary glioblastoma (GBM) patients.
| Unmethylated ( | Methylated ( | ||
|---|---|---|---|
| Sex, | male | 9 (69.2) | 10 (83.3) |
| female | 4 (30.8) | 2 (16.7) | |
| Age, mean ± SD, years | 58.00 ± 12.85 | 61.33 ± 13.65 | |
| Age, | <50 yr | 4 (30.8) | 2 (16.7) |
| >50 yr | 9 (69.2) | 10 (83.3) | |
| Preoperative KPS, (%) | 81.64 ± 12.01 | 81.64 ± 12.01 | |
| Postoperative KPS, (%) | 80.00 ± 12.06 | 80.00 ± 12.06 | |
KPS: Karnofsky performance status.
Semi-quantitative evaluation of the level of methylated MGMT promoter using different approaches ((I) to (III)); see Material and Methods).
| PMR | (I) | (II) | (III) |
|---|---|---|---|
| <1, | 5 (20.0) | 6 (24.0) | 5 (20.0) |
| >1, | 7 (28.0) | 6 (24.0) | 7 (28.0) |
| 0, | 13 (52.0) | 13 (52.0) | 13 (52.0) |
Correlation of MSP data obtained by various percentage of methylated reference (PMR) approaches.
| ICC | 95% CI |
| |
|---|---|---|---|
| (I) vs. (II) | 0.763 | 0.532–0.888 | <0.001 |
| (I) vs. (III) | 0.493 | 0.139–0.739 | 0.005 |
| (II) vs. (III) | 0.844 | 0.678–0.928 | <0.001 |
ICC: interclass correlation coefficient; CI: Confidence interval.
Associations between overall survival, TMZ treatment, gender and MGMT methylation assessed by univariate analyses (log-rank test).
|
| SE | 95% CI | Log-Rank |
| ||
|---|---|---|---|---|---|---|
| Lower Limit | Upper Limit | |||||
| No TMZ | 5.000 | 0.781 | 3.469 | 6.531 | 15.721 | <0.001 |
| TMZ | 15.000 | 1.799 | 11.473 | 18.527 | ||
| Male | 8.167 | 1.462 | 5.300 | 11.033 | 0.221 | 0.638 |
| Female | 7.167 | 2.151 | 2.950 | 11.383 | ||
| Unmethylated | 7.083 | 1.574 | 3.999 | 10.168 | 0.727 | 0.394 |
| Methylated | 8.750 | 1.855 | 5.114 | 12.386 | ||
: mean value; SE: standard error; CI: confidence interval; p: probability value calculated using log-rank test; p values < 0.05 were considered statistically significant.
Figure 3Kaplan–Meier estimates of overall survival (months) related to temozolomide treatment (A), methylation status of MGMT promoter (B), and gender (C). Overall Survival: time from date of surgery to death or the end of the follow-up. Cum Survival: cumulative survival as the proportion of surviving in time. p: probability value calculated using log-rank test. p value <0.05 were considered statistically significant.