| Literature DB >> 30713737 |
Mohammed Boulhaoua1, Sevgi Kansiz2, Mohamed El Hafi1, Sanae Lahmidi1, Necmi Dege2, Mohammed Benchidmi1, Joel T Mague3.
Abstract
In the title compound, C17H14N4O3, the indazole unit is planar to within 0.0171 (10) Å and makes dihedral angles of 6.50 (6) and 6.79 (4)°, respectively, with the nitro and pendant phenyl groups. The conformation of the oxazole ring is best described as an envelope. In the crystal, oblique stacks along the a-axis direction are formed by π-π stacking inter-actions between the indazole unit and the pendant phenyl rings of adjacent mol-ecules. The stacks are linked into pairs through C-H⋯O hydrogen bonds. Hirshfeld surface analysis and two-dimensional fingerprint plots indicate that the most important contributions to the crystal packing are from H⋯H (36.3%), O⋯H/H⋯O (23.4%), C⋯H/H⋯C (13.4%) and N⋯H/H⋯N (11.4%) inter-actions.Entities:
Keywords: Hirshfeld surface analysis; crystal structure; hydrogen bond; indazole; oxazole; π–π-stacking
Year: 2019 PMID: 30713737 PMCID: PMC6323876 DOI: 10.1107/S2056989018017590
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The title molecule with the labelling scheme and 50% probability ellipsoids.
Figure 2Detail of the intermolecular C—H⋯O hydrogen bonds (black dashed lines) and π–π-stacking interactions (orange dashed lines) [symmetry codes: (i) −x + 1, y − , −z + ; (ii) −x + 1, y + , −z + ; (iii) x, −y + , z − ; (iv) x − 1, −y + , z − ; Cg2, Cg3 and Cg4 are the centroids of the C1/C6/C7/N1/N2, C1–C6 and C12–C17 rings, respectively].
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C7—H7⋯O1i | 0.959 (16) | 2.467 (16) | 3.3877 (14) | 160.9 (13) |
Symmetry code: (i) .
Figure 3Packing viewed along the a-axis direction. A portion of the intermolecular interactions, depicted as in Fig. 2 ▸, is shown.
Figure 4Hirshfeld surface mapped over d norm to visualize the intermolecular interactions.
Figure 5The fingerprint plot for the title compound.
Figure 6A view of the three-dimensional Hirshfeld surface plotted over molecular electrostatic potential in the range −0.0698 to 0.0535 a.u. using the STO-3 G basis set at the Hartree–Fock level of theory.
Experimental details
| Crystal data | |
| Chemical formula | C17H14N4O3 |
|
| 322.32 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 7.8595 (4), 11.8831 (7), 15.5716 (9) |
| β (°) | 101.853 (1) |
|
| 1423.30 (14) |
|
| 4 |
| Radiation type | Mo |
| μ (mm−1) | 0.11 |
| Crystal size (mm) | 0.35 × 0.32 × 0.17 |
| Data collection | |
| Diffractometer | Bruker SMART APEX CCD |
| Absorption correction | Multi-scan ( |
|
| 0.90, 0.98 |
| No. of measured, independent and observed [ | 26832, 3807, 3116 |
|
| 0.032 |
| (sin θ/λ)max (Å−1) | 0.684 |
| Refinement | |
|
| 0.041, 0.120, 1.05 |
| No. of reflections | 3807 |
| No. of parameters | 273 |
| H-atom treatment | All H-atom parameters refined |
| Δρmax, Δρmin (e Å−3) | 0.49, −0.20 |
Computer programs: APEX3 and SAINT (Bruker, 2016 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2014 (Sheldrick, 2015b ▸), DIAMOND (Brandenburg & Putz, 2012 ▸) and SHELXTL (Sheldrick, 2008 ▸).
| C17H14N4O3 | |
| Monoclinic, | Mo |
| Cell parameters from 9953 reflections | |
| θ = 2.7–29.1° | |
| µ = 0.11 mm−1 | |
| β = 101.853 (1)° | |
| Block, colourless | |
| 0.35 × 0.32 × 0.17 mm |
| Bruker SMART APEX CCD diffractometer | 3807 independent reflections |
| Radiation source: fine-focus sealed tube | 3116 reflections with |
| Graphite monochromator | |
| Detector resolution: 8.3333 pixels mm-1 | θmax = 29.1°, θmin = 2.2° |
| φ and ω scans | |
| Absorption correction: multi-scan ( | |
| 26832 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: difference Fourier map | |
| All H-atom parameters refined | |
| 3807 reflections | (Δ/σ)max < 0.001 |
| 273 parameters | Δρmax = 0.49 e Å−3 |
| 0 restraints | Δρmin = −0.20 e Å−3 |
| Experimental. The diffraction data were obtained from 3 sets of 400 frames, each of width 0.5° in ω, colllected at φ = 0.00, 90.00 and 180.00° and 2 sets of 800 frames, each of width 0.45° in φ, collected at ω = –30.00 and 210.00°. The scan time was 20 sec/frame. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| O1 | 0.65493 (11) | 0.74043 (7) | 0.41423 (5) | 0.0191 (2) | |
| O2 | 0.30551 (13) | 0.88196 (8) | −0.02290 (6) | 0.0285 (2) | |
| O3 | 0.20589 (12) | 0.71575 (8) | −0.06215 (6) | 0.0245 (2) | |
| N1 | 0.69220 (13) | 0.46778 (8) | 0.25680 (7) | 0.0185 (2) | |
| N2 | 0.72589 (12) | 0.57977 (8) | 0.27365 (6) | 0.0158 (2) | |
| N3 | 0.74782 (13) | 0.82212 (8) | 0.47244 (7) | 0.0174 (2) | |
| N4 | 0.30425 (13) | 0.77874 (9) | −0.01243 (7) | 0.0189 (2) | |
| C1 | 0.63510 (14) | 0.64559 (10) | 0.20885 (7) | 0.0144 (2) | |
| C2 | 0.62565 (15) | 0.76290 (10) | 0.19937 (8) | 0.0169 (2) | |
| H2 | 0.685 (2) | 0.8130 (14) | 0.2417 (11) | 0.031 (4)* | |
| C3 | 0.51782 (15) | 0.80431 (10) | 0.12540 (8) | 0.0168 (2) | |
| H3 | 0.504 (2) | 0.8820 (14) | 0.1145 (10) | 0.024 (4)* | |
| C4 | 0.42155 (14) | 0.73017 (10) | 0.06319 (7) | 0.0161 (2) | |
| C5 | 0.42849 (14) | 0.61464 (10) | 0.07119 (8) | 0.0158 (2) | |
| H5 | 0.357 (2) | 0.5659 (14) | 0.0287 (10) | 0.028 (4)* | |
| C6 | 0.53865 (14) | 0.57188 (9) | 0.14574 (8) | 0.0152 (2) | |
| C7 | 0.58181 (15) | 0.46238 (10) | 0.18078 (8) | 0.0182 (2) | |
| H7 | 0.542 (2) | 0.3910 (13) | 0.1558 (10) | 0.025 (4)* | |
| C8 | 0.84131 (15) | 0.61131 (10) | 0.35495 (7) | 0.0171 (2) | |
| H8A | 0.9079 (18) | 0.6778 (12) | 0.3442 (9) | 0.016 (3)* | |
| H8B | 0.9229 (18) | 0.5481 (12) | 0.3686 (9) | 0.016 (3)* | |
| C9 | 0.74607 (15) | 0.63288 (10) | 0.42928 (8) | 0.0168 (2) | |
| H9 | 0.6526 (19) | 0.5757 (13) | 0.4289 (10) | 0.020 (4)* | |
| C10 | 0.87110 (16) | 0.64689 (10) | 0.51745 (8) | 0.0174 (2) | |
| H10A | 0.992 (2) | 0.6201 (13) | 0.5155 (10) | 0.023 (4)* | |
| H10B | 0.829 (2) | 0.6065 (13) | 0.5660 (11) | 0.023 (4)* | |
| C11 | 0.86519 (14) | 0.77242 (10) | 0.52933 (7) | 0.0153 (2) | |
| C12 | 0.97578 (14) | 0.83461 (10) | 0.60166 (7) | 0.0155 (2) | |
| C13 | 0.96755 (15) | 0.95199 (10) | 0.60656 (8) | 0.0184 (2) | |
| H13 | 0.890 (2) | 0.9941 (14) | 0.5607 (11) | 0.028 (4)* | |
| C14 | 1.06651 (16) | 1.00864 (11) | 0.67741 (8) | 0.0213 (3) | |
| H14 | 1.060 (2) | 1.0871 (16) | 0.6806 (11) | 0.035 (5)* | |
| C15 | 1.17610 (16) | 0.94898 (11) | 0.74367 (8) | 0.0214 (3) | |
| H15 | 1.249 (2) | 0.9886 (15) | 0.7961 (11) | 0.034 (4)* | |
| C16 | 1.18699 (16) | 0.83273 (11) | 0.73863 (8) | 0.0199 (2) | |
| H16 | 1.256 (2) | 0.7904 (14) | 0.7837 (10) | 0.026 (4)* | |
| C17 | 1.08704 (15) | 0.77535 (10) | 0.66777 (8) | 0.0177 (2) | |
| H17 | 1.0992 (19) | 0.6917 (13) | 0.6650 (10) | 0.024 (4)* |
| O1 | 0.0189 (4) | 0.0187 (4) | 0.0176 (4) | 0.0040 (3) | −0.0014 (3) | −0.0028 (3) |
| O2 | 0.0362 (6) | 0.0189 (5) | 0.0263 (5) | 0.0060 (4) | −0.0030 (4) | 0.0037 (4) |
| O3 | 0.0237 (5) | 0.0280 (5) | 0.0183 (4) | −0.0012 (4) | −0.0041 (4) | −0.0007 (4) |
| N1 | 0.0223 (5) | 0.0131 (5) | 0.0202 (5) | −0.0003 (4) | 0.0045 (4) | −0.0004 (4) |
| N2 | 0.0183 (5) | 0.0132 (5) | 0.0147 (5) | 0.0014 (3) | 0.0008 (4) | −0.0005 (3) |
| N3 | 0.0181 (5) | 0.0178 (5) | 0.0157 (5) | 0.0010 (4) | 0.0021 (4) | −0.0012 (4) |
| N4 | 0.0194 (5) | 0.0205 (5) | 0.0159 (5) | 0.0032 (4) | 0.0016 (4) | 0.0003 (4) |
| C1 | 0.0145 (5) | 0.0151 (5) | 0.0135 (5) | 0.0005 (4) | 0.0026 (4) | −0.0004 (4) |
| C2 | 0.0187 (5) | 0.0146 (5) | 0.0165 (5) | −0.0003 (4) | 0.0017 (4) | −0.0022 (4) |
| C3 | 0.0181 (5) | 0.0141 (5) | 0.0181 (6) | 0.0015 (4) | 0.0035 (4) | 0.0002 (4) |
| C4 | 0.0146 (5) | 0.0196 (5) | 0.0135 (5) | 0.0024 (4) | 0.0018 (4) | 0.0010 (4) |
| C5 | 0.0144 (5) | 0.0178 (5) | 0.0150 (5) | −0.0008 (4) | 0.0024 (4) | −0.0023 (4) |
| C6 | 0.0147 (5) | 0.0150 (5) | 0.0162 (5) | −0.0010 (4) | 0.0044 (4) | −0.0019 (4) |
| C7 | 0.0195 (6) | 0.0148 (5) | 0.0203 (6) | −0.0016 (4) | 0.0038 (4) | −0.0013 (4) |
| C8 | 0.0162 (5) | 0.0184 (5) | 0.0148 (5) | 0.0019 (4) | −0.0010 (4) | −0.0008 (4) |
| C9 | 0.0180 (5) | 0.0147 (5) | 0.0169 (5) | 0.0015 (4) | 0.0016 (4) | 0.0011 (4) |
| C10 | 0.0216 (6) | 0.0150 (5) | 0.0148 (5) | 0.0027 (4) | 0.0018 (4) | 0.0004 (4) |
| C11 | 0.0165 (5) | 0.0151 (5) | 0.0147 (5) | 0.0011 (4) | 0.0039 (4) | 0.0011 (4) |
| C12 | 0.0148 (5) | 0.0175 (5) | 0.0145 (5) | 0.0008 (4) | 0.0037 (4) | 0.0013 (4) |
| C13 | 0.0174 (5) | 0.0171 (5) | 0.0201 (6) | 0.0007 (4) | 0.0022 (4) | 0.0021 (4) |
| C14 | 0.0214 (6) | 0.0175 (6) | 0.0245 (6) | −0.0020 (4) | 0.0034 (5) | −0.0012 (5) |
| C15 | 0.0202 (6) | 0.0259 (6) | 0.0179 (6) | −0.0036 (5) | 0.0033 (5) | −0.0020 (5) |
| C16 | 0.0188 (6) | 0.0256 (6) | 0.0146 (5) | 0.0005 (5) | 0.0016 (4) | 0.0033 (4) |
| C17 | 0.0193 (6) | 0.0178 (5) | 0.0160 (6) | 0.0023 (4) | 0.0039 (4) | 0.0025 (4) |
| O1—N3 | 1.4230 (13) | C8—C9 | 1.5238 (16) |
| O1—C9 | 1.4603 (14) | C8—H8A | 0.981 (15) |
| O2—N4 | 1.2377 (14) | C8—H8B | 0.982 (15) |
| O3—N4 | 1.2294 (13) | C9—C10 | 1.5245 (17) |
| N1—C7 | 1.3176 (16) | C9—H9 | 1.000 (15) |
| N1—N2 | 1.3716 (13) | C10—C11 | 1.5050 (15) |
| N2—C1 | 1.3577 (14) | C10—H10A | 1.006 (16) |
| N2—C8 | 1.4472 (15) | C10—H10B | 1.007 (16) |
| N3—C11 | 1.2840 (15) | C11—C12 | 1.4724 (16) |
| N4—C4 | 1.4573 (15) | C12—C17 | 1.3966 (15) |
| C1—C2 | 1.4022 (16) | C12—C13 | 1.3991 (16) |
| C1—C6 | 1.4147 (15) | C13—C14 | 1.3866 (17) |
| C2—C3 | 1.3734 (16) | C13—H13 | 0.976 (16) |
| C2—H2 | 0.940 (17) | C14—C15 | 1.3943 (18) |
| C3—C4 | 1.4093 (16) | C14—H14 | 0.936 (19) |
| C3—H3 | 0.941 (16) | C15—C16 | 1.3873 (18) |
| C4—C5 | 1.3785 (16) | C15—H15 | 1.011 (18) |
| C5—C6 | 1.3936 (16) | C16—C17 | 1.3941 (17) |
| C5—H5 | 0.967 (17) | C16—H16 | 0.941 (16) |
| C6—C7 | 1.4248 (16) | C17—H17 | 1.000 (16) |
| C7—H7 | 0.959 (16) | ||
| N3—O1—C9 | 108.92 (8) | H8A—C8—H8B | 107.8 (11) |
| C7—N1—N2 | 106.54 (9) | O1—C9—C8 | 109.07 (9) |
| C1—N2—N1 | 111.44 (9) | O1—C9—C10 | 104.66 (9) |
| C1—N2—C8 | 129.81 (10) | C8—C9—C10 | 112.09 (10) |
| N1—N2—C8 | 118.70 (9) | O1—C9—H9 | 105.0 (9) |
| C11—N3—O1 | 109.12 (9) | C8—C9—H9 | 110.8 (9) |
| O3—N4—O2 | 122.78 (10) | C10—C9—H9 | 114.6 (9) |
| O3—N4—C4 | 118.64 (10) | C11—C10—C9 | 100.86 (9) |
| O2—N4—C4 | 118.56 (10) | C11—C10—H10A | 111.8 (9) |
| N2—C1—C2 | 131.25 (11) | C9—C10—H10A | 112.0 (9) |
| N2—C1—C6 | 106.53 (10) | C11—C10—H10B | 110.9 (9) |
| C2—C1—C6 | 122.22 (10) | C9—C10—H10B | 111.9 (9) |
| C3—C2—C1 | 117.05 (11) | H10A—C10—H10B | 109.2 (13) |
| C3—C2—H2 | 119.7 (10) | N3—C11—C12 | 121.64 (10) |
| C1—C2—H2 | 123.2 (10) | N3—C11—C10 | 114.02 (10) |
| C2—C3—C4 | 120.28 (11) | C12—C11—C10 | 124.27 (10) |
| C2—C3—H3 | 122.1 (10) | C17—C12—C13 | 119.43 (11) |
| C4—C3—H3 | 117.6 (10) | C17—C12—C11 | 119.51 (10) |
| C5—C4—C3 | 123.69 (11) | C13—C12—C11 | 121.03 (10) |
| C5—C4—N4 | 118.31 (10) | C14—C13—C12 | 120.18 (11) |
| C3—C4—N4 | 117.97 (10) | C14—C13—H13 | 119.8 (10) |
| C4—C5—C6 | 116.40 (10) | C12—C13—H13 | 120.0 (10) |
| C4—C5—H5 | 121.9 (10) | C13—C14—C15 | 120.15 (12) |
| C6—C5—H5 | 121.6 (10) | C13—C14—H14 | 119.8 (11) |
| C5—C6—C1 | 120.36 (10) | C15—C14—H14 | 120.0 (11) |
| C5—C6—C7 | 135.26 (11) | C16—C15—C14 | 120.02 (12) |
| C1—C6—C7 | 104.35 (10) | C16—C15—H15 | 118.5 (10) |
| N1—C7—C6 | 111.14 (10) | C14—C15—H15 | 121.4 (10) |
| N1—C7—H7 | 120.5 (9) | C15—C16—C17 | 120.03 (11) |
| C6—C7—H7 | 128.3 (9) | C15—C16—H16 | 121.5 (10) |
| N2—C8—C9 | 112.99 (10) | C17—C16—H16 | 118.4 (10) |
| N2—C8—H8A | 108.6 (8) | C16—C17—C12 | 120.17 (11) |
| C9—C8—H8A | 110.9 (8) | C16—C17—H17 | 118.5 (9) |
| N2—C8—H8B | 104.8 (8) | C12—C17—H17 | 121.3 (9) |
| C9—C8—H8B | 111.4 (8) | ||
| C7—N1—N2—C1 | 0.80 (13) | C1—C6—C7—N1 | 0.01 (13) |
| C7—N1—N2—C8 | 178.51 (10) | C1—N2—C8—C9 | 86.13 (14) |
| C9—O1—N3—C11 | −10.56 (12) | N1—N2—C8—C9 | −91.08 (12) |
| N1—N2—C1—C2 | 178.29 (11) | N3—O1—C9—C8 | −104.57 (10) |
| C8—N2—C1—C2 | 0.9 (2) | N3—O1—C9—C10 | 15.55 (11) |
| N1—N2—C1—C6 | −0.80 (12) | N2—C8—C9—O1 | −73.99 (12) |
| C8—N2—C1—C6 | −178.17 (11) | N2—C8—C9—C10 | 170.59 (9) |
| N2—C1—C2—C3 | −179.03 (11) | O1—C9—C10—C11 | −13.98 (11) |
| C6—C1—C2—C3 | −0.06 (16) | C8—C9—C10—C11 | 104.09 (10) |
| C1—C2—C3—C4 | 0.43 (16) | O1—N3—C11—C12 | −176.33 (9) |
| C2—C3—C4—C5 | −0.33 (17) | O1—N3—C11—C10 | 0.66 (13) |
| C2—C3—C4—N4 | 177.74 (10) | C9—C10—C11—N3 | 8.74 (13) |
| O3—N4—C4—C5 | 5.90 (15) | C9—C10—C11—C12 | −174.36 (10) |
| O2—N4—C4—C5 | −175.49 (10) | N3—C11—C12—C17 | 172.37 (11) |
| O3—N4—C4—C3 | −172.27 (10) | C10—C11—C12—C17 | −4.30 (16) |
| O2—N4—C4—C3 | 6.33 (16) | N3—C11—C12—C13 | −5.78 (17) |
| C3—C4—C5—C6 | −0.17 (17) | C10—C11—C12—C13 | 177.55 (11) |
| N4—C4—C5—C6 | −178.23 (10) | C17—C12—C13—C14 | −1.29 (17) |
| C4—C5—C6—C1 | 0.53 (16) | C11—C12—C13—C14 | 176.86 (10) |
| C4—C5—C6—C7 | 178.17 (12) | C12—C13—C14—C15 | 0.67 (18) |
| N2—C1—C6—C5 | 178.75 (10) | C13—C14—C15—C16 | 0.31 (18) |
| C2—C1—C6—C5 | −0.44 (17) | C14—C15—C16—C17 | −0.66 (18) |
| N2—C1—C6—C7 | 0.47 (12) | C15—C16—C17—C12 | 0.03 (17) |
| C2—C1—C6—C7 | −178.72 (10) | C13—C12—C17—C16 | 0.95 (17) |
| N2—N1—C7—C6 | −0.48 (13) | C11—C12—C17—C16 | −177.23 (10) |
| C5—C6—C7—N1 | −177.89 (12) |
| H··· | ||||
| C7—H7···O1i | 0.959 (16) | 2.467 (16) | 3.3877 (14) | 160.9 (13) |