Literature DB >> 26594476

Crystal structure of triethyl 2-(5-nitro-2H-indazol-2-yl)propane-1,2,3-tri-carboxyl-ate.

Mohammed Boulhaoua1, Mohammed Benchidmi1, El Mokhtar Essassi1, Mohamed Saadi2, Lahcen El Ammari2.   

Abstract

In the title compound, C19H23N3O8, the 5-nitro-2H-indazol-2-yl unit is almost planar, with the maximum deviation from the mean plane being 0.024 (2) Å. The fused-ring system is nearly perpendicular to the three carboxyl-ate groups, with dihedral angles of 90.0 (3), 83.8 (1) and 80.4 (1)°. The ethyl groups attached to both ends of the propane chain are each disordered over two sets of sites, with site-occupancy ratios of 0.425 (17):0.575 (17) and 0.302 (15):0.698 (15). In the crystal, mol-ecules are linked by pairs of C-H⋯N hydrogen bonds, forming inversion dimers. The dimers are further linked by C-H⋯O hydrogen bonds, forming a three-dimensional network.

Entities:  

Keywords:  biochemical properties; crystal structure; ester; indazole; pharmacological properties

Year:  2015        PMID: 26594476      PMCID: PMC4647391          DOI: 10.1107/S2056989015017235

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For the pharmacological and biochemical properties of indazoles and their derivatives, see: Abbassi et al. (2014 ▸); Li et al. (2003 ▸); Lee et al. (2001 ▸). For compounds with similar structures, see: El Brahmi et al. (2012 ▸); Chicha et al. (2013 ▸).

Experimental

Crystal data

C19H23N3O8 M = 421.40 Monoclinic, a = 13.4555 (4) Å b = 18.6185 (6) Å c = 8.5258 (3) Å β = 104.603 (1)° V = 2066.90 (12) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 296 K 0.42 × 0.31 × 0.26 mm

Data collection

Bruker X8 APEX diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▸) T min = 0.673, T max = 0.746 36533 measured reflections 4233 independent reflections 3523 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.129 S = 1.03 4233 reflections 309 parameters 4 restraints H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.25 e Å−3

Data collection: APEX2 (Bruker, 2009 ▸); cell refinement: SAINT (Bruker, 2009 ▸); data reduction: SAINT; program(s) used to solve structure: SHELXS2013 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2013 (Sheldrick, 2008 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸); software used to prepare material for publication: PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015017235/is5422sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015017235/is5422Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015017235/is5422Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015017235/is5422fig1.tif Mol­ecular structure of the title compound with the atom-labelling scheme. Displacement ellipsoids are drawn at the 50% probability level. H atoms are represented as small circles. Click here for additional data file. . DOI: 10.1107/S2056989015017235/is5422fig2.tif A packing view of the title compound showing mol­ecules linked together by hydrogen bonds as dashed lines. CCDC reference: 1424508 Additional supporting information: crystallographic information; 3D view; checkCIF report
C19H23N3O8F(000) = 888
Mr = 421.40Dx = 1.354 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 13.4555 (4) ÅCell parameters from 4233 reflections
b = 18.6185 (6) Åθ = 2.7–26.4°
c = 8.5258 (3) ŵ = 0.11 mm1
β = 104.603 (1)°T = 296 K
V = 2066.90 (12) Å3Block, colourless
Z = 40.42 × 0.31 × 0.26 mm
Bruker X8 APEX diffractometer4233 independent reflections
Radiation source: fine-focus sealed tube3523 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.031
φ and ω scansθmax = 26.4°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −16→16
Tmin = 0.673, Tmax = 0.746k = −23→23
36533 measured reflectionsl = −10→10
Refinement on F24 restraints
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.045H-atom parameters constrained
wR(F2) = 0.129w = 1/[σ2(Fo2) + (0.0586P)2 + 0.8225P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max = 0.003
4233 reflectionsΔρmax = 0.30 e Å3
309 parametersΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
C10.57273 (14)0.40719 (9)0.4318 (2)0.0514 (4)
H10.57400.45660.41700.062*
C20.63996 (13)0.36345 (10)0.3833 (2)0.0510 (4)
H20.68820.38300.33440.061*
C30.63713 (11)0.28818 (9)0.4066 (2)0.0423 (4)
C40.56810 (11)0.25484 (8)0.4740 (2)0.0392 (3)
H40.56750.20520.48590.047*
C50.49768 (11)0.29933 (8)0.52479 (18)0.0340 (3)
C60.50052 (11)0.37504 (8)0.5058 (2)0.0385 (3)
C70.41751 (11)0.28790 (8)0.59778 (19)0.0360 (3)
H70.39480.24390.62720.043*
C80.29510 (11)0.37241 (8)0.69122 (19)0.0352 (3)
C90.22024 (12)0.42301 (8)0.5780 (2)0.0395 (3)
H9A0.16990.43990.63320.047*
H9B0.25790.46450.55510.047*
C100.16487 (13)0.38884 (9)0.4201 (2)0.0451 (4)
C11A0.0301 (7)0.4160 (8)0.1824 (13)0.074 (3)0.425 (17)
H11A0.05900.37640.13460.088*0.425 (17)
H11B0.03300.45960.12120.088*0.425 (17)
C12A−0.0758 (10)0.4003 (13)0.194 (2)0.130 (6)0.425 (17)
H12A−0.11910.39170.08760.195*0.425 (17)
H12B−0.10180.44050.24190.195*0.425 (17)
H12C−0.07520.35850.26010.195*0.425 (17)
C11B0.0141 (6)0.3852 (5)0.2097 (12)0.075 (2)0.575 (17)
H11C0.04920.38150.12360.090*0.575 (17)
H11D−0.00050.33710.24150.090*0.575 (17)
C12B−0.0826 (6)0.4264 (6)0.1532 (14)0.089 (3)0.575 (17)
H12D−0.12470.40410.05790.134*0.575 (17)
H12E−0.06690.47470.12810.134*0.575 (17)
H12F−0.11870.42720.23690.134*0.575 (17)
C130.24285 (12)0.30296 (8)0.7280 (2)0.0393 (3)
H13A0.21980.27510.62930.047*
H13B0.29200.27420.80550.047*
C140.15273 (14)0.32020 (10)0.7957 (2)0.0503 (4)
C15A−0.0178 (6)0.3478 (8)0.7695 (11)0.057 (3)0.302 (15)
H15A−0.03690.31700.84880.069*0.302 (15)
H15B0.00800.39310.81980.069*0.302 (15)
C16A−0.1043 (10)0.3585 (16)0.6243 (16)0.107 (7)0.302 (15)
H16A−0.16390.37410.65740.161*0.302 (15)
H16B−0.11910.31400.56610.161*0.302 (15)
H16C−0.08580.39420.55550.161*0.302 (15)
C15B−0.0333 (4)0.3135 (4)0.7256 (9)0.0766 (16)0.698 (15)
H15C−0.02480.30550.84060.092*0.698 (15)
H15D−0.07970.27730.66630.092*0.698 (15)
C16B−0.0756 (7)0.3862 (2)0.6799 (14)0.106 (3)0.698 (15)
H16D−0.14430.38880.69290.158*0.698 (15)
H16E−0.07630.39570.56900.158*0.698 (15)
H16F−0.03350.42130.74850.158*0.698 (15)
C170.34844 (12)0.40826 (9)0.8553 (2)0.0423 (4)
C180.35337 (18)0.50899 (12)1.0282 (3)0.0682 (6)
H18A0.42630.49891.06490.082*
H18B0.34510.56051.01310.082*
C190.3021 (2)0.48556 (16)1.1524 (3)0.0839 (7)
H19A0.33140.51031.25210.126*
H19B0.31120.43471.16900.126*
H19C0.23010.49631.11720.126*
N10.71300 (11)0.24372 (9)0.3546 (2)0.0561 (4)
N20.42831 (10)0.40789 (7)0.56357 (18)0.0432 (3)
N30.37965 (9)0.35279 (6)0.61715 (15)0.0346 (3)
O10.71038 (13)0.17910 (8)0.3693 (2)0.0810 (5)
O20.77500 (13)0.27406 (10)0.2951 (3)0.0952 (6)
O30.19189 (12)0.33658 (8)0.36163 (16)0.0686 (4)
O40.08034 (11)0.42484 (9)0.35264 (18)0.0758 (5)
O50.16075 (13)0.34111 (10)0.9308 (2)0.0840 (5)
O60.06455 (10)0.30905 (10)0.6864 (2)0.0762 (5)
O70.41569 (11)0.37912 (8)0.95228 (17)0.0683 (4)
O80.31115 (10)0.47256 (6)0.87260 (15)0.0528 (3)
U11U22U33U12U13U23
C10.0514 (10)0.0374 (8)0.0739 (12)−0.0036 (7)0.0316 (9)0.0027 (8)
C20.0439 (9)0.0520 (10)0.0651 (12)−0.0052 (7)0.0285 (8)−0.0004 (8)
C30.0330 (7)0.0481 (9)0.0468 (9)0.0030 (6)0.0119 (7)−0.0071 (7)
C40.0356 (7)0.0352 (7)0.0467 (9)0.0034 (6)0.0105 (7)−0.0024 (6)
C50.0322 (7)0.0320 (7)0.0378 (8)−0.0002 (5)0.0083 (6)−0.0012 (6)
C60.0372 (7)0.0327 (7)0.0484 (9)−0.0008 (6)0.0160 (7)−0.0011 (6)
C70.0378 (7)0.0283 (7)0.0439 (8)0.0015 (6)0.0138 (6)0.0009 (6)
C80.0351 (7)0.0319 (7)0.0418 (8)0.0014 (6)0.0159 (6)−0.0019 (6)
C90.0394 (8)0.0355 (7)0.0467 (9)0.0060 (6)0.0169 (7)0.0002 (6)
C100.0455 (9)0.0487 (9)0.0429 (9)0.0099 (7)0.0148 (7)0.0025 (7)
C11A0.077 (5)0.086 (7)0.051 (4)0.022 (4)0.004 (3)0.000 (4)
C12A0.091 (9)0.213 (17)0.077 (8)−0.061 (9)0.004 (6)−0.018 (9)
C11B0.068 (4)0.084 (5)0.058 (4)0.025 (3)−0.013 (3)−0.017 (3)
C12B0.065 (4)0.116 (5)0.077 (5)0.025 (3)−0.003 (3)−0.002 (3)
C130.0410 (8)0.0362 (8)0.0442 (9)−0.0024 (6)0.0172 (7)0.0010 (6)
C140.0526 (10)0.0478 (9)0.0591 (11)−0.0020 (8)0.0302 (9)0.0079 (8)
C15A0.042 (4)0.066 (7)0.073 (5)0.001 (4)0.031 (4)0.001 (4)
C16A0.050 (6)0.177 (19)0.095 (9)0.008 (8)0.020 (5)0.029 (10)
C15B0.048 (2)0.082 (3)0.111 (4)−0.005 (2)0.039 (2)−0.005 (3)
C16B0.078 (5)0.103 (4)0.152 (8)0.031 (3)0.058 (5)0.012 (4)
C170.0384 (8)0.0414 (8)0.0496 (9)−0.0001 (6)0.0156 (7)−0.0072 (7)
C180.0766 (14)0.0605 (12)0.0694 (14)−0.0083 (10)0.0222 (11)−0.0304 (10)
C190.0993 (18)0.0977 (18)0.0555 (13)0.0002 (15)0.0214 (13)−0.0182 (12)
N10.0420 (8)0.0628 (10)0.0689 (11)0.0059 (7)0.0240 (7)−0.0085 (8)
N20.0454 (7)0.0288 (6)0.0626 (9)−0.0017 (5)0.0269 (7)0.0016 (6)
N30.0353 (6)0.0278 (6)0.0440 (7)0.0005 (5)0.0163 (5)0.0008 (5)
O10.0826 (11)0.0582 (9)0.1184 (14)0.0257 (8)0.0552 (10)0.0049 (9)
O20.0723 (10)0.0863 (12)0.1535 (18)−0.0031 (9)0.0777 (12)−0.0181 (11)
O30.0801 (10)0.0674 (9)0.0513 (8)0.0270 (7)0.0039 (7)−0.0158 (7)
O40.0639 (9)0.0976 (11)0.0563 (8)0.0383 (8)−0.0025 (7)−0.0173 (8)
O50.0877 (11)0.1046 (13)0.0768 (11)−0.0112 (9)0.0526 (9)−0.0237 (9)
O60.0411 (7)0.1151 (13)0.0780 (10)0.0068 (7)0.0252 (7)0.0200 (9)
O70.0600 (8)0.0730 (9)0.0603 (8)0.0205 (7)−0.0067 (7)−0.0192 (7)
O80.0645 (8)0.0419 (6)0.0531 (7)0.0044 (5)0.0169 (6)−0.0119 (5)
C1—C21.357 (2)C12B—H12D0.9600
C1—C61.418 (2)C12B—H12E0.9600
C1—H10.9300C12B—H12F0.9600
C2—C31.417 (2)C13—C141.503 (2)
C2—H20.9300C13—H13A0.9700
C3—C41.359 (2)C13—H13B0.9700
C3—N11.467 (2)C14—O51.195 (2)
C4—C51.407 (2)C14—O61.327 (2)
C4—H40.9300C15A—C16A1.4828 (10)
C5—C71.391 (2)C15A—O61.627 (10)
C5—C61.420 (2)C15A—H15A0.9700
C6—N21.3424 (19)C15A—H15B0.9700
C7—N31.3375 (18)C16A—H16A0.9600
C7—H70.9300C16A—H16B0.9600
C8—N31.4794 (18)C16A—H16C0.9600
C8—C91.531 (2)C15B—O61.440 (4)
C8—C131.541 (2)C15B—C16B1.4825 (10)
C8—C171.553 (2)C15B—H15C0.9700
C9—C101.506 (2)C15B—H15D0.9700
C9—H9A0.9700C16B—H16D0.9600
C9—H9B0.9700C16B—H16E0.9600
C10—O31.191 (2)C16B—H16F0.9600
C10—O41.320 (2)C17—O71.191 (2)
C11A—O41.448 (11)C17—O81.3205 (19)
C11A—C12A1.4826 (10)C18—C191.468 (3)
C11A—H11A0.9700C18—O81.471 (2)
C11A—H11B0.9700C18—H18A0.9700
C12A—H12A0.9600C18—H18B0.9700
C12A—H12B0.9600C19—H19A0.9600
C12A—H12C0.9600C19—H19B0.9600
C11B—C12B1.4824 (10)C19—H19C0.9600
C11B—O41.508 (8)N1—O11.211 (2)
C11B—H11C0.9700N1—O21.219 (2)
C11B—H11D0.9700N2—N31.3567 (17)
C2—C1—C6117.83 (15)C14—C13—C8110.65 (13)
C2—C1—H1121.1C14—C13—H13A109.5
C6—C1—H1121.1C8—C13—H13A109.5
C1—C2—C3120.47 (15)C14—C13—H13B109.5
C1—C2—H2119.8C8—C13—H13B109.5
C3—C2—H2119.8H13A—C13—H13B108.1
C4—C3—C2123.80 (14)O5—C14—O6125.14 (18)
C4—C3—N1118.15 (15)O5—C14—C13123.66 (18)
C2—C3—N1118.05 (15)O6—C14—C13111.21 (16)
C3—C4—C5116.51 (14)C16A—C15A—O6100.0 (12)
C3—C4—H4121.7C16A—C15A—H15A111.8
C5—C4—H4121.7O6—C15A—H15A111.8
C7—C5—C4134.93 (14)C16A—C15A—H15B111.8
C7—C5—C6104.42 (12)O6—C15A—H15B111.8
C4—C5—C6120.65 (13)H15A—C15A—H15B109.5
N2—C6—C1127.71 (14)C15A—C16A—H16A109.5
N2—C6—C5111.56 (13)C15A—C16A—H16B109.5
C1—C6—C5120.72 (14)H16A—C16A—H16B109.5
N3—C7—C5106.23 (12)C15A—C16A—H16C109.5
N3—C7—H7126.9H16A—C16A—H16C109.5
C5—C7—H7126.9H16B—C16A—H16C109.5
N3—C8—C9109.71 (12)O6—C15B—C16B107.7 (4)
N3—C8—C13108.61 (11)O6—C15B—H15C110.2
C9—C8—C13112.54 (12)C16B—C15B—H15C110.2
N3—C8—C17105.09 (11)O6—C15B—H15D110.2
C9—C8—C17112.63 (12)C16B—C15B—H15D110.2
C13—C8—C17107.94 (13)H15C—C15B—H15D108.5
C10—C9—C8113.73 (13)C15B—C16B—H16D109.5
C10—C9—H9A108.8C15B—C16B—H16E109.5
C8—C9—H9A108.8H16D—C16B—H16E109.5
C10—C9—H9B108.8C15B—C16B—H16F109.5
C8—C9—H9B108.8H16D—C16B—H16F109.5
H9A—C9—H9B107.7H16E—C16B—H16F109.5
O3—C10—O4123.57 (17)O7—C17—O8125.39 (16)
O3—C10—C9125.79 (15)O7—C17—C8121.80 (14)
O4—C10—C9110.64 (14)O8—C17—C8112.81 (14)
O4—C11A—C12A99.7 (9)C19—C18—O8111.62 (18)
O4—C11A—H11A111.8C19—C18—H18A109.3
C12A—C11A—H11A111.8O8—C18—H18A109.3
O4—C11A—H11B111.8C19—C18—H18B109.3
C12A—C11A—H11B111.8O8—C18—H18B109.3
H11A—C11A—H11B109.5H18A—C18—H18B108.0
C11A—C12A—H12A109.5C18—C19—H19A109.5
C11A—C12A—H12B109.5C18—C19—H19B109.5
H12A—C12A—H12B109.5H19A—C19—H19B109.5
C11A—C12A—H12C109.5C18—C19—H19C109.5
H12A—C12A—H12C109.5H19A—C19—H19C109.5
H12B—C12A—H12C109.5H19B—C19—H19C109.5
C12B—C11B—O4107.5 (7)O1—N1—O2122.96 (16)
C12B—C11B—H11C110.2O1—N1—C3119.26 (15)
O4—C11B—H11C110.2O2—N1—C3117.76 (16)
C12B—C11B—H11D110.2C6—N2—N3103.56 (12)
O4—C11B—H11D110.2C7—N3—N2114.22 (12)
H11C—C11B—H11D108.5C7—N3—C8129.31 (12)
C11B—C12B—H12D109.5N2—N3—C8116.45 (11)
C11B—C12B—H12E109.5C10—O4—C11A120.8 (5)
H12D—C12B—H12E109.5C10—O4—C11B111.8 (3)
C11B—C12B—H12F109.5C14—O6—C15B122.4 (4)
H12D—C12B—H12F109.5C14—O6—C15A102.2 (4)
H12E—C12B—H12F109.5C17—O8—C18116.58 (15)
D—H···AD—HH···AD···AD—H···A
C1—H1···N2i0.932.533.443 (2)168
C4—H4···O7ii0.932.533.205 (2)129
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C1H1N2i 0.932.533.443(2)168
C4H4O7ii 0.932.533.205(2)129

Symmetry codes: (i) ; (ii) .

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Journal:  Arch Pharm (Weinheim)       Date:  2014-02-19       Impact factor: 3.751

5.  1-Allyl-6-nitro-1H-indazole.

Authors:  Nabil El Brahmi; Mohammed Benchidmi; El Mokhtar Essassi; Sonia Ladeira; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-11-17

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

7.  1-Allyl-3-chloro-5-nitro-1H-indazole.

Authors:  Hakima Chicha; El Mostapha Rakib; Domenico Spinelli; Mohamed Saadi; Lahcen El Ammari
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-08-10
  7 in total
  2 in total

1.  Crystal structure of 2-[2-(2,5-di-chloro-benz-yloxy)-2-(furan-2-yl)eth-yl]-2H-indazole.

Authors:  Özden Özel Güven; Gökhan Türk; Philip D F Adler; Simon J Coles; Tuncer Hökelek
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-09-05

2.  Crystal structure and Hirshfeld surface analysis of 5-[(5-nitro-1H-indazol-1-yl)meth-yl]-3-phenyl-4,5-di-hydro-isoxazole.

Authors:  Mohammed Boulhaoua; Sevgi Kansiz; Mohamed El Hafi; Sanae Lahmidi; Necmi Dege; Mohammed Benchidmi; Joel T Mague
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2019-01-01
  2 in total

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