Literature DB >> 30703685

Alternative splicing of neuronal genes: new mechanisms and new therapies.

Diane Lipscombe1, Eduardo Javier Lopez Soto2.   

Abstract

Dynamic changes in alternative splicing during the life cycle of neurons support development and plasticity, and are implicated in disease pathology. Cell-specific alternative splicing programs coordinate exon selection across networks of functionally connected genes. In this opinion piece, we highlight recent publications that identify some of the molecular mechanisms-RNA and DNA binding proteins and epigenetic modifications-which direct cell-specific exon selection during pre-mRNA splicing. Aberrant splicing patterns are signature features of a growing number of diseases of the nervous system. Recent publications demonstrate the value of delineating basic mechanisms that dictate exon choice to inform the development of new therapeutic strategies that correct or compensate for damaging deficits in alternative splicing.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 30703685      PMCID: PMC6629480          DOI: 10.1016/j.conb.2018.12.013

Source DB:  PubMed          Journal:  Curr Opin Neurobiol        ISSN: 0959-4388            Impact factor:   6.627


  57 in total

Review 1.  Multiple links between transcription and splicing.

Authors:  Alberto R Kornblihtt; Manuel de la Mata; Juan Pablo Fededa; Manuel J Munoz; Guadalupe Nogues
Journal:  RNA       Date:  2004-10       Impact factor: 4.942

2.  Cartography of neurexin alternative splicing mapped by single-molecule long-read mRNA sequencing.

Authors:  Barbara Treutlein; Ozgun Gokce; Stephen R Quake; Thomas C Südhof
Journal:  Proc Natl Acad Sci U S A       Date:  2014-03-17       Impact factor: 11.205

3.  Splicing Activation by Rbfox Requires Self-Aggregation through Its Tyrosine-Rich Domain.

Authors:  Yi Ying; Xiao-Jun Wang; Celine K Vuong; Chia-Ho Lin; Andrey Damianov; Douglas L Black
Journal:  Cell       Date:  2017-07-13       Impact factor: 41.582

Review 4.  Epigenetics in alternative pre-mRNA splicing.

Authors:  Reini F Luco; Mariano Allo; Ignacio E Schor; Alberto R Kornblihtt; Tom Misteli
Journal:  Cell       Date:  2011-01-07       Impact factor: 41.582

5.  Regulation of alternative splicing by histone modifications.

Authors:  Reini F Luco; Qun Pan; Kaoru Tominaga; Benjamin J Blencowe; Olivia M Pereira-Smith; Tom Misteli
Journal:  Science       Date:  2010-02-04       Impact factor: 47.728

6.  Rbfox Splicing Factors Promote Neuronal Maturation and Axon Initial Segment Assembly.

Authors:  Martin Jacko; Sebastien M Weyn-Vanhentenryck; John W Smerdon; Rui Yan; Huijuan Feng; Damian J Williams; Joy Pai; Ke Xu; Hynek Wichterle; Chaolin Zhang
Journal:  Neuron       Date:  2018-02-01       Impact factor: 17.173

7.  Histone demethylase JMJD1A promotes alternative splicing of AR variant 7 (AR-V7) in prostate cancer cells.

Authors:  Lingling Fan; Fengbo Zhang; Songhui Xu; Xiaolu Cui; Arif Hussain; Ladan Fazli; Martin Gleave; Xuesen Dong; Jianfei Qi
Journal:  Proc Natl Acad Sci U S A       Date:  2018-04-30       Impact factor: 11.205

8.  A chromatin code for alternative splicing involving a putative association between CTCF and HP1α proteins.

Authors:  Eneritz Agirre; Nicolás Bellora; Mariano Alló; Amadís Pagès; Paola Bertucci; Alberto R Kornblihtt; Eduardo Eyras
Journal:  BMC Biol       Date:  2015-05-02       Impact factor: 7.431

9.  Epigenetic regulation of the circadian gene Per1 contributes to age-related changes in hippocampal memory.

Authors:  Janine L Kwapis; Yasaman Alaghband; Enikö A Kramár; Alberto J López; Annie Vogel Ciernia; André O White; Guanhua Shu; Diane Rhee; Christina M Michael; Emilie Montellier; Yu Liu; Christophe N Magnan; Siwei Chen; Paolo Sassone-Corsi; Pierre Baldi; Dina P Matheos; Marcelo A Wood
Journal:  Nat Commun       Date:  2018-08-20       Impact factor: 14.919

10.  Dissecting the Causal Mechanism of X-Linked Dystonia-Parkinsonism by Integrating Genome and Transcriptome Assembly.

Authors:  Tatsiana Aneichyk; William T Hendriks; Rachita Yadav; David Shin; Dadi Gao; Christine A Vaine; Ryan L Collins; Aloysius Domingo; Benjamin Currall; Alexei Stortchevoi; Trisha Multhaupt-Buell; Ellen B Penney; Lilian Cruz; Jyotsna Dhakal; Harrison Brand; Carrie Hanscom; Caroline Antolik; Marisela Dy; Ashok Ragavendran; Jason Underwood; Stuart Cantsilieris; Katherine M Munson; Evan E Eichler; Patrick Acuña; Criscely Go; R Dominic G Jamora; Raymond L Rosales; Deanna M Church; Stephen R Williams; Sarah Garcia; Christine Klein; Ulrich Müller; Kirk C Wilhelmsen; H T Marc Timmers; Yechiam Sapir; Brian J Wainger; Daniel Henderson; Naoto Ito; Neil Weisenfeld; David Jaffe; Nutan Sharma; Xandra O Breakefield; Laurie J Ozelius; D Cristopher Bragg; Michael E Talkowski
Journal:  Cell       Date:  2018-02-22       Impact factor: 66.850

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  12 in total

1.  Editorial overview: Molecular neuroscience.

Authors:  Timothy A Ryan; Yishi Jin
Journal:  Curr Opin Neurobiol       Date:  2019-06-30       Impact factor: 6.627

2.  Chromatin-mediated alternative splicing regulates cocaine-reward behavior.

Authors:  Song-Jun Xu; Sonia I Lombroso; Delaney K Fischer; Marco D Carpenter; Dylan M Marchione; Peter J Hamilton; Carissa J Lim; Rachel L Neve; Benjamin A Garcia; Mathieu E Wimmer; R Christopher Pierce; Elizabeth A Heller
Journal:  Neuron       Date:  2021-09-03       Impact factor: 18.688

Review 3.  Neurodegenerative diseases: a hotbed for splicing defects and the potential therapies.

Authors:  Dunhui Li; Craig Stewart McIntosh; Frank Louis Mastaglia; Steve Donald Wilton; May Thandar Aung-Htut
Journal:  Transl Neurodegener       Date:  2021-05-20       Impact factor: 8.014

4.  Comprehensive identification of mRNA isoforms reveals the diversity of neural cell-surface molecules with roles in retinal development and disease.

Authors:  Thomas A Ray; Kelly Cochran; Chris Kozlowski; Jingjing Wang; Graham Alexander; Martha A Cady; William J Spencer; Philip A Ruzycki; Brian S Clark; Annelies Laeremans; Ming-Xiao He; Xiaoming Wang; Emily Park; Ying Hao; Alessandro Iannaccone; Gary Hu; Olivier Fedrigo; Nikolai P Skiba; Vadim Y Arshavsky; Jeremy N Kay
Journal:  Nat Commun       Date:  2020-07-03       Impact factor: 14.919

5.  Cacna1b alternative splicing impacts excitatory neurotransmission and is linked to behavioral responses to aversive stimuli.

Authors:  Alexandra Bunda; Brianna LaCarubba; Melanie Bertolino; Marie Akiki; Kevin Bath; Javier Lopez-Soto; Diane Lipscombe; Arturo Andrade
Journal:  Mol Brain       Date:  2019-10-21       Impact factor: 4.399

Review 6.  Temperature-Dependent Alternative Splicing of Precursor mRNAs and Its Biological Significance: A Review Focused on Post-Transcriptional Regulation of a Cold Shock Protein Gene in Hibernating Mammals.

Authors:  Takahiko Shiina; Yasutake Shimizu
Journal:  Int J Mol Sci       Date:  2020-10-14       Impact factor: 5.923

7.  The Splicing of the Mitochondrial Calcium Uniporter Genuine Activator MICU1 Is Driven by RBFOX2 Splicing Factor during Myogenic Differentiation.

Authors:  Denis Vecellio Reane; Cristina Cerqua; Sabrina Sacconi; Leonardo Salviati; Eva Trevisson; Anna Raffaello
Journal:  Int J Mol Sci       Date:  2022-02-24       Impact factor: 6.208

8.  Profile of TREM2-Derived circRNA and mRNA Variants in the Entorhinal Cortex of Alzheimer's Disease Patients.

Authors:  Amaya Urdánoz-Casado; Javier Sánchez-Ruiz de Gordoa; Maitane Robles; Miren Roldan; María Victoria Zelaya; Idoia Blanco-Luquin; Maite Mendioroz
Journal:  Int J Mol Sci       Date:  2022-07-12       Impact factor: 6.208

9.  Mutations in Spliceosomal Genes PPIL1 and PRP17 Cause Neurodegenerative Pontocerebellar Hypoplasia with Microcephaly.

Authors:  Guoliang Chai; Alice Webb; Chen Li; Danny Antaki; Sangmoon Lee; Martin W Breuss; Nhi Lang; Valentina Stanley; Paula Anzenberg; Xiaoxu Yang; Trevor Marshall; Patrick Gaffney; Klaas J Wierenga; Brian Hon-Yin Chung; Mandy Ho-Yin Tsang; Lynn S Pais; Alysia Kern Lovgren; Grace E VanNoy; Heidi L Rehm; Ghayda Mirzaa; Eyby Leon; Jullianne Diaz; Alexander Neumann; Arnout P Kalverda; Iain W Manfield; David A Parry; Clare V Logan; Colin A Johnson; David T Bonthron; Elizabeth M A Valleley; Mahmoud Y Issa; Sherif F Abdel-Ghafar; Mohamed S Abdel-Hamid; Patricia Jennings; Maha S Zaki; Eamonn Sheridan; Joseph G Gleeson
Journal:  Neuron       Date:  2020-11-20       Impact factor: 17.173

10.  Immunological significance of survival-related alternative splicing in uveal melanoma.

Authors:  Deqian Kong; Li Li; Huajun Wang; Ke Li; Guangying Zheng
Journal:  Aging (Albany NY)       Date:  2022-01-19       Impact factor: 5.682

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