Literature DB >> 21215366

Epigenetics in alternative pre-mRNA splicing.

Reini F Luco1, Mariano Allo, Ignacio E Schor, Alberto R Kornblihtt, Tom Misteli.   

Abstract

Alternative splicing plays critical roles in differentiation, development, and disease and is a major source for protein diversity in higher eukaryotes. Analysis of alternative splicing regulation has traditionally focused on RNA sequence elements and their associated splicing factors, but recent provocative studies point to a key function of chromatin structure and histone modifications in alternative splicing regulation. These insights suggest that epigenetic regulation determines not only what parts of the genome are expressed but also how they are spliced. Copyright Â
© 2011 Elsevier Inc. All rights reserved.

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Year:  2011        PMID: 21215366      PMCID: PMC3038581          DOI: 10.1016/j.cell.2010.11.056

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  93 in total

1.  ISIS, the intron information system, reveals the high frequency of alternative splicing in the human genome.

Authors:  L Croft; S Schandorff; F Clark; K Burrage; P Arctander; J S Mattick
Journal:  Nat Genet       Date:  2000-04       Impact factor: 38.330

2.  Stimulatory effect of splicing factors on transcriptional elongation.

Authors:  Y W Fong; Q Zhou
Journal:  Nature       Date:  2001 Dec 20-27       Impact factor: 49.962

Review 3.  An extensive network of coupling among gene expression machines.

Authors:  Tom Maniatis; Robin Reed
Journal:  Nature       Date:  2002-04-04       Impact factor: 49.962

4.  T7 RNA polymerase-directed transcripts are processed in yeast and link 3' end formation to mRNA nuclear export.

Authors:  Ken Dower; Michael Rosbash
Journal:  RNA       Date:  2002-05       Impact factor: 4.942

5.  Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing.

Authors:  Robert J Sims; Scott Millhouse; Chi-Fu Chen; Brian A Lewis; Hediye Erdjument-Bromage; Paul Tempst; James L Manley; Danny Reinberg
Journal:  Mol Cell       Date:  2007-11-30       Impact factor: 17.970

6.  A genome-wide RNA interference screen reveals that variant histones are necessary for replication-dependent histone pre-mRNA processing.

Authors:  Eric J Wagner; Brandon D Burch; Ashley C Godfrey; Harmony R Salzler; Robert J Duronio; William F Marzluff
Journal:  Mol Cell       Date:  2007-11-30       Impact factor: 17.970

Review 7.  Searching for splicing motifs.

Authors:  Lawrence A Chasin
Journal:  Adv Exp Med Biol       Date:  2007       Impact factor: 2.622

8.  Antagonistic effects of T-Ag and VP16 reveal a role for RNA pol II elongation on alternative splicing.

Authors:  S Kadener; P Cramer; G Nogués; D Cazalla; M de la Mata; J P Fededa; S E Werbajh; A Srebrow; A R Kornblihtt
Journal:  EMBO J       Date:  2001-10-15       Impact factor: 11.598

9.  Human STAGA complex is a chromatin-acetylating transcription coactivator that interacts with pre-mRNA splicing and DNA damage-binding factors in vivo.

Authors:  E Martinez; V B Palhan; A Tjernberg; E S Lymar; A M Gamper; T K Kundu; B T Chait; R G Roeder
Journal:  Mol Cell Biol       Date:  2001-10       Impact factor: 4.272

Review 10.  Alternative splicing: multiple control mechanisms and involvement in human disease.

Authors:  Javier F Cáceres; Alberto R Kornblihtt
Journal:  Trends Genet       Date:  2002-04       Impact factor: 11.639

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  378 in total

1.  Calcium-mediated histone modifications regulate alternative splicing in cardiomyocytes.

Authors:  Alok Sharma; Hieu Nguyen; Cuiyu Geng; Melissa N Hinman; Guangbin Luo; Hua Lou
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-03       Impact factor: 11.205

2.  Tracking intron removal in real time.

Authors:  Bruce A Hamilton; Xiang-Dong Fu
Journal:  Dev Cell       Date:  2011-12-13       Impact factor: 12.270

Review 3.  Biomedical impact of splicing mutations revealed through exome sequencing.

Authors:  Bahar Taneri; Esra Asilmaz; Terry Gaasterland
Journal:  Mol Med       Date:  2012-03-30       Impact factor: 6.354

4.  TCERG1 regulates alternative splicing of the Bcl-x gene by modulating the rate of RNA polymerase II transcription.

Authors:  Marta Montes; Alexandre Cloutier; Noemí Sánchez-Hernández; Laetitia Michelle; Bruno Lemieux; Marco Blanchette; Cristina Hernández-Munain; Benoit Chabot; Carlos Suñé
Journal:  Mol Cell Biol       Date:  2011-12-12       Impact factor: 4.272

5.  RNA driving the epigenetic bus.

Authors:  John S Mattick
Journal:  EMBO J       Date:  2012-02-01       Impact factor: 11.598

6.  A genome resource to address mechanisms of developmental programming: determination of the fetal sheep heart transcriptome.

Authors:  Laura A Cox; Jeremy P Glenn; Kimberly D Spradling; Mark J Nijland; Roy Garcia; Peter W Nathanielsz; Stephen P Ford
Journal:  J Physiol       Date:  2012-04-16       Impact factor: 5.182

Review 7.  Recent developments in myofibroblast biology: paradigms for connective tissue remodeling.

Authors:  Boris Hinz; Sem H Phan; Victor J Thannickal; Marco Prunotto; Alexis Desmoulière; John Varga; Olivier De Wever; Marc Mareel; Giulio Gabbiani
Journal:  Am J Pathol       Date:  2012-03-02       Impact factor: 4.307

8.  Genome-Wide Analysis of Heat-Sensitive Alternative Splicing in Physcomitrella patens.

Authors:  Chiung-Yun Chang; Wen-Dar Lin; Shih-Long Tu
Journal:  Plant Physiol       Date:  2014-04-28       Impact factor: 8.340

9.  Interferon regulatory factor 1 and a variant of heterogeneous nuclear ribonucleoprotein L coordinately silence the gene for adhesion protein CEACAM1.

Authors:  Kenneth J Dery; Craig Silver; Lu Yang; John E Shively
Journal:  J Biol Chem       Date:  2018-05-02       Impact factor: 5.157

10.  Brahma regulates a specific trans-splicing event at the mod(mdg4) locus of Drosophila melanogaster.

Authors:  Simei Yu; Johan Waldholm; Stefanie Böhm; Neus Visa
Journal:  RNA Biol       Date:  2014-02-06       Impact factor: 4.652

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