Literature DB >> 33452260

Sensing the future of bio-informational engineering.

Thomas A Dixon1, Thomas C Williams2,3, Isak S Pretorius4.   

Abstract

The practices of synthetic biology are being integrated into 'multiscale' designs enabling two-way communication across organic and inorganic information substrates in biological, digital and cyber-physical system integrations. Novel applications of 'bio-informational' engineering will arise in environmental monitoring, precision agriculture, precision medicine and next-generation biomanufacturing. Potential developments include sentinel plants for environmental monitoring and autonomous bioreactors that respond to biosensor signaling. As bio-informational understanding progresses, both natural and engineered biological systems will need to be reimagined as cyber-physical architectures. We propose that a multiple length scale taxonomy will assist in rationalizing and enabling this transformative development in engineering biology.

Entities:  

Mesh:

Year:  2021        PMID: 33452260      PMCID: PMC7810845          DOI: 10.1038/s41467-020-20764-2

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  84 in total

1.  Glutamate triggers long-distance, calcium-based plant defense signaling.

Authors:  Masatsugu Toyota; Dirk Spencer; Satoe Sawai-Toyota; Wang Jiaqi; Tong Zhang; Abraham J Koo; Gregg A Howe; Simon Gilroy
Journal:  Science       Date:  2018-09-14       Impact factor: 47.728

2.  Control of Allosteric Protein Electrochemical Switches with Biomolecular and Electronic Signals.

Authors:  Paolo Bollella; Selvakumar Edwardraja; Zhong Guo; Evgeny Katz
Journal:  J Phys Chem Lett       Date:  2020-06-30       Impact factor: 6.475

3.  OptoBase: A Web Platform for Molecular Optogenetics.

Authors:  Katja Kolar; Christian Knobloch; Hendrik Stork; Matej Žnidarič; Wilfried Weber
Journal:  ACS Synth Biol       Date:  2018-07-03       Impact factor: 5.110

Review 4.  Synthetic Evolution of Metabolic Productivity Using Biosensors.

Authors:  Thomas C Williams; Isak S Pretorius; Ian T Paulsen
Journal:  Trends Biotechnol       Date:  2016-03-03       Impact factor: 19.536

5.  Exploiting nongenetic cell-to-cell variation for enhanced biosynthesis.

Authors:  Yi Xiao; Christopher H Bowen; Di Liu; Fuzhong Zhang
Journal:  Nat Chem Biol       Date:  2016-03-21       Impact factor: 15.040

6.  Mind-controlled transgene expression by a wireless-powered optogenetic designer cell implant.

Authors:  Marc Folcher; Sabine Oesterle; Katharina Zwicky; Thushara Thekkottil; Julie Heymoz; Muriel Hohmann; Matthias Christen; Marie Daoud El-Baba; Peter Buchmann; Martin Fussenegger
Journal:  Nat Commun       Date:  2014-11-11       Impact factor: 14.919

7.  Electronic control of gene expression and cell behaviour in Escherichia coli through redox signalling.

Authors:  Tanya Tschirhart; Eunkyoung Kim; Ryan McKay; Hana Ueda; Hsuan-Chen Wu; Alex Eli Pottash; Amin Zargar; Alejandro Negrete; Joseph Shiloach; Gregory F Payne; William E Bentley
Journal:  Nat Commun       Date:  2017-01-17       Impact factor: 14.919

8.  The industrial yeast Pichia pastoris is converted from a heterotroph into an autotroph capable of growth on CO2.

Authors:  Thomas Gassler; Michael Sauer; Brigitte Gasser; Michael Egermeier; Christina Troyer; Tim Causon; Stephan Hann; Diethard Mattanovich; Matthias G Steiger
Journal:  Nat Biotechnol       Date:  2019-12-16       Impact factor: 54.908

9.  Synthetic Light-Activated Ion Channels for Optogenetic Activation and Inhibition.

Authors:  Sebastian Beck; Jing Yu-Strzelczyk; Dennis Pauls; Oana M Constantin; Christine E Gee; Nadine Ehmann; Robert J Kittel; Georg Nagel; Shiqiang Gao
Journal:  Front Neurosci       Date:  2018-10-02       Impact factor: 4.677

10.  A redox-based electrogenetic CRISPR system to connect with and control biological information networks.

Authors:  Narendranath Bhokisham; Eric VanArsdale; Kristina T Stephens; Pricila Hauk; Gregory F Payne; William E Bentley
Journal:  Nat Commun       Date:  2020-05-15       Impact factor: 14.919

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  9 in total

1.  A global forum on synthetic biology: the need for international engagement.

Authors:  Thomas A Dixon; Paul S Freemont; Richard A Johnson; Isak S Pretorius
Journal:  Nat Commun       Date:  2022-06-18       Impact factor: 17.694

Review 2.  Therapeutic cell engineering: designing programmable synthetic genetic circuits in mammalian cells.

Authors:  Maysam Mansouri; Martin Fussenegger
Journal:  Protein Cell       Date:  2021-09-29       Impact factor: 15.328

3.  Electrochemical Response of Redox Amino Acid Encoded Fluorescence Protein for Hydroxychloroquine Sensing.

Authors:  Asuma Janeena; Narayanan Jayaraman; Ganesh Shanmugam; Shanmugam Easwaramoorthi; Niraikulam Ayyadurai
Journal:  Appl Biochem Biotechnol       Date:  2022-10-19       Impact factor: 3.094

Review 4.  Harnessing bioengineered microbes as a versatile platform for space nutrition.

Authors:  Briardo Llorente; Thomas C Williams; Hugh D Goold; Isak S Pretorius; Ian T Paulsen
Journal:  Nat Commun       Date:  2022-10-19       Impact factor: 17.694

Review 5.  Advances, Challenges and Future Trends of Cell-Free Transcription-Translation Biosensors.

Authors:  Ting Wang; Yuan Lu
Journal:  Biosensors (Basel)       Date:  2022-05-10

6.  A Programmable Dual-Regime Spray for Large-Scale and Custom-Designed Electronic Textiles.

Authors:  Taehoo Chang; Semih Akin; Min Ku Kim; Laura Murray; Bongjoong Kim; Seungse Cho; Sena Huh; Sengul Teke; Laurent Couetil; Martin Byung-Guk Jun; Chi Hwan Lee
Journal:  Adv Mater       Date:  2022-01-24       Impact factor: 30.849

7.  Seeding the idea of encapsulating a representative synthetic metagenome in a single yeast cell.

Authors:  Ignacio Belda; Thomas C Williams; Miguel de Celis; Ian T Paulsen; Isak S Pretorius
Journal:  Nat Commun       Date:  2021-03-11       Impact factor: 14.919

8.  Visualizing the next frontiers in wine yeast research.

Authors:  I S Pretorius
Journal:  FEMS Yeast Res       Date:  2022-03-11       Impact factor: 2.923

9.  Polymer Encapsulation of Bacterial Biosensors Enables Coculture with Mammalian Cells.

Authors:  Ignacio Moya-Ramírez; Pavlos Kotidis; Masue Marbiah; Juhyun Kim; Cleo Kontoravdi; Karen Polizzi
Journal:  ACS Synth Biol       Date:  2022-03-04       Impact factor: 5.110

  9 in total

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