Literature DB >> 24632010

DNA assembly for plant biology: techniques and tools.

Nicola J Patron1.   

Abstract

As the speed and accuracy of genome sequencing improves, there are ever-increasing resources available for the design and construction of synthetic DNA parts. These can be used to engineer plant genomes to produce new functions or to elucidate the function of endogenous sequences. Until recently the assembly of amplified or cloned sequences into large and complex designs was a limiting step in plant synthetic biology and biotechnology. A number of new methods for assembling DNA molecules have been developed in the last few years, several of which have been applied to the production of molecules used to modify plant genomes.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 24632010     DOI: 10.1016/j.pbi.2014.02.004

Source DB:  PubMed          Journal:  Curr Opin Plant Biol        ISSN: 1369-5266            Impact factor:   7.834


  14 in total

Review 1.  Synthetic genetic circuits in crop plants.

Authors:  Orlando de Lange; Eric Klavins; Jennifer Nemhauser
Journal:  Curr Opin Biotechnol       Date:  2017-07-31       Impact factor: 9.740

Review 2.  Engineered minichromosomes in plants.

Authors:  James A Birchler
Journal:  Chromosome Res       Date:  2015-02       Impact factor: 5.239

Review 3.  Synthetic Botany.

Authors:  Christian R Boehm; Bernardo Pollak; Nuri Purswani; Nicola Patron; Jim Haseloff
Journal:  Cold Spring Harb Perspect Biol       Date:  2017-07-05       Impact factor: 10.005

Review 4.  Synthetic Switches and Regulatory Circuits in Plants.

Authors:  Jennifer Andres; Tim Blomeier; Matias D Zurbriggen
Journal:  Plant Physiol       Date:  2019-01-28       Impact factor: 8.340

5.  Gibson assembly: an easy way to clone potyviral full-length infectious cDNA clones expressing an ectopic VPg.

Authors:  Amandine Bordat; Marie-Christine Houvenaghel; Sylvie German-Retana
Journal:  Virol J       Date:  2015-06-14       Impact factor: 4.099

6.  Rule-Based Design of Plant Expression Vectors Using GenoCAD.

Authors:  Anna Coll; Mandy L Wilson; Kristina Gruden; Jean Peccoud
Journal:  PLoS One       Date:  2015-07-06       Impact factor: 3.240

Review 7.  Computational genomic identification and functional reconstitution of plant natural product biosynthetic pathways.

Authors:  Marnix H Medema; Anne Osbourn
Journal:  Nat Prod Rep       Date:  2016-06-20       Impact factor: 13.423

8.  Plant X-tender: An extension of the AssemblX system for the assembly and expression of multigene constructs in plants.

Authors:  Tjaša Lukan; Fabian Machens; Anna Coll; Špela Baebler; Katrin Messerschmidt; Kristina Gruden
Journal:  PLoS One       Date:  2018-01-04       Impact factor: 3.240

9.  A modular cloning toolbox for the generation of chloroplast transformation vectors.

Authors:  Yavar Vafaee; Agata Staniek; Maria Mancheno-Solano; Heribert Warzecha
Journal:  PLoS One       Date:  2014-10-10       Impact factor: 3.240

10.  plantiSMASH: automated identification, annotation and expression analysis of plant biosynthetic gene clusters.

Authors:  Satria A Kautsar; Hernando G Suarez Duran; Kai Blin; Anne Osbourn; Marnix H Medema
Journal:  Nucleic Acids Res       Date:  2017-07-03       Impact factor: 19.160

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