| Literature DB >> 30665373 |
Shuang Wang1, Jingqi Zhang1, Fan Jun1, Zhijie Bai2.
Abstract
BACKGROUND: There are several meta-analyses on the genetic relationship between the rs1695 polymorphism within the GSTP1 (glutathione S-transferase pi 1) gene and the risk of different SCC (squamous cell carcinoma) diseases, such as ESCC (oesophageal SCC), HNSCC (head and neck SCC), LSCC (lung SCC), and SSCC (skin SCC). Nevertheless, no unified conclusions have been drawn.Entities:
Keywords: GSTP1; Polymorphism; Squamous cell carcinoma; Susceptibility
Mesh:
Substances:
Year: 2019 PMID: 30665373 PMCID: PMC6340173 DOI: 10.1186/s12881-019-0750-x
Source DB: PubMed Journal: BMC Med Genet ISSN: 1471-2350 Impact factor: 2.103
Fig. 1Flow chart of eligible article selection
Basic information of the eligible articles in the meta-analysis
| First author | Year | Region | Race | Assay | Case | Disease type | Control | Control source |
| ||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AA | AG | GG | AA | AG | GG | ||||||||
| Abbas | 2004 | France | Caucasian | PCR-RFLP | 21 | 21 | 3 | ESCC | 59 | 56 | 9 | PB | 0.38 |
| Cabelguenne | 2001 | France | Caucasian | PCR-RFLP | 89 | 57 | 16 | HNSCC | 146 | 139 | 25 | HB | 0.31 |
| Cai | 2006 | China | Asian | PCR-RFLP | 143 | 58 | 3 | ESCC | 265 | 116 | 12 | PB | 0.87 |
| Cho | 2006 | Korea | Asian | Gene sequencing | 201 | 85 | 7 | HNSCC | 211 | 112 | 10 | HB | 0.29 |
| Dura | 2013 | Netherlands | Caucasian | PCR | 48 | 42 | 15 | ESCC | 246 | 261 | 84 | PB | 0.27 |
| Dzian | 2012 | Netherlands | Caucasian | PCR-RFLP | 56 | 45 | 11 | LSCC | 153 | 115 | 22 | PB/HB | 0.95 |
| Evans | 2004 | USA | Caucasian | PCR-RFLP | 123 | 132 | 27 | HNSCC | 97 | 85 | 24 | PB | 0.42 |
| Fryer | 2005 | Australia | Caucasian | PCR-RFLP | 59 | 51 | 18 | SSCC | 95 | 90 | 25 | HB | 0.60 |
| Harth | 2008 | Germany | Caucasian | PCR-melting-curve | 145 | 122 | 45 | HNSCC | 130 | 138 | 32 | HB | 0.62 |
| Jain | 2006 | India | Asian | PCR-RFLP | 46 | 23 | 7 | ESCC | 72 | 56 | 9 | HB | 0.67 |
| Jourenkova | 1999a | France | Caucasian | PCR-RFLP | 49 | 53 | 15 | HNSCC | 86 | 64 | 22 | HB | 0.07 |
| Jourenkova | 1999b | France | Caucasian | PCR-RFLP | 62 | 52 | 15 | HNSCC | 86 | 64 | 22 | HB | 0.07 |
| Jourenkova | 1998 | France | Caucasian | PCR-RFLP | 46 | 41 | 11 | LSCC | 86 | 64 | 22 | HB | 0.07 |
| Kelders | 2002 | Netherlands | Caucasian | PCR-RFLP | 36 | 38 | 13 | HNSCC | 26 | 18 | 7 | HB | 0.20 |
| Kihara | 1999 | Japan | Asian | PCR-RFLP | 84 | 32 | 9 | LSCC | 184 | 65 | 8 | HB | 0.45 |
| Larsen | 2006 | Australia | Caucasian | PCR-RFLP | 230 | 213 | 51 | LSCC | 161 | 169 | 49a | HB | 0.66 |
| Australia | Caucasian | PCR-RFLP | 230 | 213 | 51 | LSCC | 112 | 100 | 35b | PB | 0.11 | ||
| Leichsenring | 2006 | Brazil | Mixed | PCR-RFLP | 30 | 34 | 8 | HNSCC | 30 | 25 | 5 | PB | 0.95 |
| Leite | 2007 | Brazil | Mixed | PCR-RFLP | 14 | 13 | 2 | SSCC | 60 | 46 | 18 | PB | 0.07 |
| Lewis | 2002 | UK | Caucasian | PCR-RFLP | 14 | 17 | 1 | LSCC | 64 | 74 | 13 | HB | 0.19 |
| Li | 2010 | South African | Black African | PCR-RFLP | 56 | 59 | 26 | ESCC | 76 | 83 | 27 | PB | 0.58 |
| Mixed | PCR-RFLP | 34 | 52 | 11 | ESCC | 30 | 51 | 13 | PB | 0.24 | |||
| Li | 2007 | USA | Caucasian | PCR-RFLP | 336 | 356 | 111 | HNSCC | 333 | 385 | 121 | PB | 0.57 |
| Liang | 2005 | China | Asian | diASA-AMP | 58 | 32 | 4 | LSCC | 132 | 86 | 9 | HB | 0.27 |
| Liu | 2010 | China | Asian | PCR-RFLP | 66 | 29 | 0 | ESCC | 61 | 27 | 3 | PB | 1.00 |
| Malik | 2010 | India | Asian | PCR-RFLP | 53 | 36 | 14 | ESCC | 111 | 75 | 9 | PB | 0.41 |
| Matejcic | 2011 | South African | Black African | TaqMan genotyping | 79 | 155 | 91 | ESCC | 100 | 242 | 132 | PB | 0.57 |
| South African | Mixed | TaqMan genotyping | 69 | 112 | 48 | ESCC | 145 | 191 | 92 | PB | 0.05 | ||
| McWilliams | 2000 | USA | Mixed | PCR-RFLP | 60 | 73 | 13 | HNSCC | 58 | 51 | 15 | HB | 0.47 |
| Miller | 2006 | USA | Caucasian | PCR-RFLP | 190 | 173 | 49 | LSCC | 579 | 623 | 141 | PB | 0.16 |
| Moaven | 2010 | Iran | Asian | PCR-RFLP | 84 | 50 | 14 | ESCC | 74 | 54 | 8 | PB | 0.65 |
| Nazar | 2003 | USA | Mixed | PCR-RFLP | 35 | 29 | 9 | LSCC | 199 | 234 | 54 | PB | 0.23 |
| Olshan | 2000 | USA | Mixed | PCR-RFLP | 40 | 62 | 7 | HNSCC | 68 | 80 | 20 | HBc | 0.63 |
| USA | Mixed | PCR-RFLP | 18 | 38 | 7 | HNSCC | 7 | 13 | 5 | HBd | 0.82 | ||
| Oude | 2003 | Netherlands | Caucasian | PCR-RFLP | 116 | 90 | 29 | HNSCC | 125 | 121 | 39 | PB | 0.27 |
| Peters | 2006 | USA | Mixed | PCR-RFLP | 303 | 311 | 76 | HNSCC | 333 | 329 | 86 | PB | 0.73 |
| Ramsay | 2001 | UK | Caucasian | SSCP | 10 | 10 | 0 | SSCC | 53 | 71 | 17 | HB | 0.36 |
| Risch | 2001 | Germany | Caucasian | PCR-RFLP | 76 | 77 | 18 | LSCC | 167 | 151 | 35 | HB | 0.92 |
| Rossini | 2007 | Brazil | Mixed | PCR-RFLP | 42 | 65 | 18 | ESCC | 116 | 108 | 28 | PB | 0.71 |
| Ruwali | 2009 | India | Caucasian | PCR-RFLP | 224 | 112 | 14 | HNSCC | 199 | 138 | 13 | PB | 0.06 |
| Ruwali | 2011 | India | Caucasian | PCR-RFLP | 316 | 162 | 22 | HNSCC | 285 | 195 | 20 | PB | 0.06 |
| Ryberg | 1997 | Norway | Caucasian | PCR-RFLP | 20 | 34 | 13 | LSCC | 153 | 117 | 27 | PB | 0.50 |
| Schneider | 2004 | Germany | Caucasian | PCR-melting-curve | 81 | 75 | 27 | LSCC | 298 | 254 | 70 | PB/HB | 0.16 |
| Soucek | 2010 | Czech/Polish | Caucasian | TaqMan drug metabolism genotyping | 56 | 53 | 7 | HNSCC | 57 | 50 | 10 | PB | 0.52 |
| Soya | 2007 | India | Asian | PCR-RFLP | 219 | 162 | 27 |
| 120 | 88 | 12 | PB | 0.42 |
| Stücker | 2002 | France | Caucasian | PCR-RFLP | 54 | 46 | 15 | LSCC | 124 | 120 | 20 | HB | 0.22 |
| Tan | 2000 | China | Asian | PCR-RFLP | 93 | 48 | 9 | ESCC | 91 | 53 | 6 | PB | 0.62 |
| To | 2002 | Spain | Caucasian | PCR-RFLP | 101 | 84 | 19 | HNSCC | 100 | 78 | 23 | PB | 0.20 |
| To | 1999 | Spain | Caucasian | PCR-RFLP | 29 | 20 | 3 | LSCC | 64 | 54 | 14 | PBb | 0.61 |
| Spain | Caucasian | PCR-RFLP | 29 | 20 | 3 | LSCC | 90 | 90 | 20 | PBe | 0.72 | ||
| van | 1999 | Netherlands | Caucasian | PCR-RFLP | 5 | 6 | 2 | ESCC | 146 | 89 | 12 | PB | 0.74 |
| Zendehdel | 2009 | Sweden | Caucasian | Pyrosequencing | 26 | 42 | 10 | ESCC | 208 | 207 | 38 | PB | 0.18 |
PCR polymerase chain reaction, PCR-RFLP polymerase chain reaction-restriction fragment length polymorphism, diASA-AMP di-allele-specific-amplification with artificially modified primers assay, SSCP Single-stranded conformational polymorphism, ESCC oesophageal squamous cell carcinoma, HNSCC head and neck squamous cell carcinoma, LSCC lung squamous cell carcinoma, SSCC skin squamous cell carcinoma, OSCC oral squamous cell carcinoma, UADTSCC upper aerodigestive tract squamous cell carcinoma, PB population-based, HB hospital-based, PHWE P value of hardy-weinberg equilibrium
aCOPD patients without LSCC, bhealthy smokers; ccontrol from Caucasian population; dcontrol from Black African population; econtrol from general population
Meta-analysis of the GSTP1 rs1695 A/G polymorphism
| Statistical analysis | Index | Allele | Carrier | Homozygote | Heterozygote | Dominant | Recessive |
|---|---|---|---|---|---|---|---|
| Association | OR | 0.99 | 0.99 | 1.02 | 0.96 | 0.97 | 1.03 |
| 95% CIs | 0.95~1.03 | 0.94~1.03 | 0.93~1.12 | 0.91~1.02 | 0.92~1.03 | 0.94~1.12 | |
|
| 0.601 | 0.587 | 0.689 | 0.167 | 0.289 | 0.548 | |
| Sample size | case | 9763 | 9763 | 9763 | 9763 | 9763 | 9763 |
| control | 15,028 | 15,028 | 15,028 | 15,028 | 15,028 | 15,028 | |
| study | 52 | 52 | 52 | 52 | 52 | 52 | |
| Heterogeneity | I2 | 15.5% | 0.0% | 9.7% | 7.7% | 11.8% | 1.2% |
|
| 0.174 | 0.999 | 0.278 | 0.318 | 0.239 | 0.450 | |
| Model | Fixed | Fixed | Fixed | Fixed | Fixed | Fixed | |
| Egger’s test | t | 1.14 | 1.38 | 0.13 | 2.36 | 2.16 | −0.31 |
|
| 0.259 | 0.175 | 0.899 | 0.022 | 0.036 | 0.760 | |
| Begg’s test | z | 0.53 | 0.84 | 0.77 | 1.96 | 1.82 | 1.29 |
|
| 0.597 | 0.398 | 0.444 | 0.049 | 0.068 | 0.198 |
OR odds ratio, CIs confidence intervals, Pa, P value of association test, Ph, P value of heterogeneity test, PE, P value of Egger’s test, PB, P value of Begg’s test
Subgroup analysis of the GSTP1 rs1695 A/G polymorphism by race, genotyping assay and control source
| Factor | Subgroup | Index | Allele | Carrier | Homozygote | Heterozygote | Dominant | Recessive |
|---|---|---|---|---|---|---|---|---|
| Race | Asian | OR (95% CIs) | 1.00 (0.89~1.12) | 0.98 (0.86~1.11) | 1.29 (0.94~1.76) | 0.90 (0.78~1.04) | 0.94 (0.82~1.08) | 1.35 (0.99~1.83) |
|
| 0.948 | 0.716 | 0.114 | 0.139 | 0.361 | 0.058 | ||
| Case/control | 1696/2139 | 1696/2139 | 1696/2139 | 1696/2139 | 1696/2139 | 1696/2139 | ||
| Study number | 10 | 10 | 10 | 10 | 10 | 10 | ||
| Race | Caucasian | OR (95% CIs) | 0.98 (0.93~1.03) | 0.98 (0.82~1.04) | 1.00 (0.89~1.12) | 0.94 (0.87~1.01) | 0.95 (0.89~1.02) | 1.02 (0.91~1.14) |
|
| 0.358 | 0.447 | 0.984 | 0.099 | 0.153 | 0.716 | ||
| Case/control | 5968/9719 | 5968/9719 | 5968/9719 | 5968/9719 | 5968/9719 | 5968/9719 | ||
| Study number | 30 | 30 | 30 | 30 | 30 | 30 | ||
| genotyping assay | PCR-RFLP | OR (95% CIs) | 0.99 (0.94~1.03) | 0.99 (0.93~1.04) | 1.01 (0.91~1.12) | 0.96 (0.90~1.03) | 0.97 (0.91~1.03) | 1.01 (0.91~1.12) |
|
| 0.542 | 0.579 | 0.874 | 0.260 | 0.351 | 0.824 | ||
| Case/control | 8008/11,342 | 8008/11,342 | 8008/11,342 | 8008/11,342 | 8008/11,342 | 8008/11,342 | ||
| Study number | 42 | 42 | 42 | 42 | 42 | 42 | ||
| control source | PB | OR (95% CIs) | 0.98 (0.94~1.03) | 0.98 (0.93~1.04) | 1.00 (0.90~1.12) | 0.96 (0.89~1.03) | 0.96 (0.90~1.03) | 1.02 (0.92~1.13) |
|
| 0.519 | 0.572 | 0.943 | 0.214 | 0.287 | 0.751 | ||
| Case/control | 6697/10,170 | 6697/10,170 | 6697/10,170 | 6697/10,170 | 6697/10,170 | 6697/10,170 | ||
| Study number | 31 | 31 | 31 | 31 | 31 | 31 | ||
| control source | HB | OR (95% CIs) | 0.98 (0.91~1.06) | 0.98 (0.90~1.07) | 1.00 (0.84~1.20) | 0.95 (0.86~1.06) | 0.96 (0.87~1.07) | 1.01 (0.85~1.19) |
|
| 0.586 | 0.638 | 0.977 | 0.377 | 0.461 | 0.944 | ||
| Case/control | 2771/3946 | 2771/3946 | 2771/3946 | 2771/3946 | 2771/3946 | 2771/3946 | ||
| Study number | 19 | 19 | 19 | 19 | 19 | 19 |
Pa, P value of association test
PCR-RFLP polymerase chain reaction-restriction fragment length polymorphism, PB population-based, HB hospital-based, OR odds ratio, CIs confidence intervals
Subgroup analysis of the GSTP1 rs1695 A/G polymorphism by SCC type
| Subgroup | Index | Allele | Carrier | Homozygote | Heterozygote | Dominant | Recessive |
|---|---|---|---|---|---|---|---|
| ESCC | OR (95% CIs) | 1.05 (0.96~1.15) | 1.03 (0.93~1.14) | 1.15 (0.95~1.39) | 1.00 (0.88~1.14) | 1.03 (0.92~1.17) | 1.13 (0.95~1.34) |
|
| 0.263 | 0.568 | 0.155 | 0.970 | 0.575 | 0.160 | |
| Case/control | 1934/3951 | 1934/3951 | 1934/3951 | 1934/3951 | 1934/3951 | 1934/3951 | |
| Study number | 15 | 15 | 15 | 15 | 15 | 15 | |
| HNSCC | OR (95% CIs) | 0.95 (0.89~1.01) | 0.96 (0.89~1.03) | 0.94 (0.82~1.09) | 0.94 (0.87~1.02) | 0.93 (0.86~1.01) | 0.95 (0.83~1.09) |
|
| 0.112 | 0.247 | 0.408 | 0.131 | 0.102 | 0.459 | |
| Case/control | 4671/4961 | 4671/4961 | 4671/4961 | 4671/4961 | 4671/4961 | 4671/4961 | |
| Study number | 18 | 18 | 18 | 18 | 18 | 18 | |
| LSCC | OR (95% CIs) | 1.00 (0.93~1.08) | 1.00 (0.92~1.09) | 1.04 (0.88~1.24) | 0.97 (0.87~1.07) | 0.98 (0.89~1.09) | 1.06 (0.90~1.25) |
|
| 0.940 | 0.973 | 0.616 | 0.526 | 0.741 | 0.485 | |
| Case/control | 2574/5421 | 2574/5421 | 2574/5421 | 2574/5421 | 2574/5421 | 2574/5421 | |
| Study number | 15 | 15 | 15 | 15 | 15 | 15 | |
| SSCC | OR (95% CIs) | 0.91 (0.70~1.19) | 0.94 (0.69~1.28) | 0.83 (0.46~1.49) | 0.94 (0.64~1.36) | 0.91 (0.64~1.30) | 0.86 (0.49~1.51) |
|
| 0.493 | 0.688 | 0.532 | 0.728 | 0.605 | 0.597 | |
| Case/control | 177/475 | 177/475 | 177/475 | 177/475 | 177/475 | 177/475 | |
| Study number | 3 | 3 | 3 | 3 | 3 | 3 |
ESCC oesophageal squamous cell carcinoma, HNSCC head and neck squamous cell carcinoma, LSCC lung squamous cell carcinoma, SSCC skin squamous cell carcinoma, OR odds ratio, CIs confidence intervals, Pa, P value of association test
Fig. 2Data of subgroup analysis by SCC type (allele model)
Fig. 3Funnel plot of publication bias analysis. a Egger’s test; b Begg’s test
Fig. 4Sensitivity analysis data (allele model)