Literature DB >> 30664871

A Nucleotide-Dependent Conformational Switch Controls the Polymerization of Human IMP Dehydrogenases to Modulate their Catalytic Activity.

David Fernández-Justel1, Rafael Núñez2, Jaime Martín-Benito3, David Jimeno4, Adrián González-López1, Eva María Soriano1, José Luis Revuelta5, Rubén M Buey6.   

Abstract

Inosine 5'-monophosphate dehydrogenase (IMPDH) catalyzes the rate-limiting step in the de novo GTP biosynthetic pathway and plays essential roles in cell proliferation. As a clinical target, IMPDH has been studied for decades, but it has only been within the last years that we are starting to understand the complexity of the mechanisms of its physiological regulation. Here, we report structural and functional insights into how adenine and guanine nucleotides control a conformational switch that modulates the assembly of the two human IMPDH enzymes into cytoophidia and allosterically regulates their catalytic activity. In vitro reconstituted micron-length cytoophidia-like structures show catalytic activity comparable to unassembled IMPDH but, in turn, are more resistant to GTP/GDP allosteric inhibition. Therefore, IMPDH cytoophidia formation facilitates the accumulation of high levels of guanine nucleotides when the cell requires it. Finally, we demonstrate that most of the IMPDH retinopathy-associated mutations abrogate GTP/GDP-induced allosteric inhibition and alter cytoophidia dynamics.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  IMP dehydrogenase; allosteric regulation; conformational switch; cytoophidia; x-ray crystallography and scattering

Mesh:

Substances:

Year:  2019        PMID: 30664871     DOI: 10.1016/j.jmb.2019.01.020

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  16 in total

1.  Post-translational regulation of retinal IMPDH1 in vivo to adjust GTP synthesis to illumination conditions.

Authors:  Anna Plana-Bonamaisó; Santiago López-Begines; David Fernández-Justel; Alexandra Junza; Ariadna Soler-Tapia; Jordi Andilla; Pablo Loza-Alvarez; Jose Luis Rosa; Esther Miralles; Isidre Casals; Oscar Yanes; Pedro de la Villa; Ruben M Buey; Ana Méndez
Journal:  Elife       Date:  2020-04-07       Impact factor: 8.140

2.  IMPDH-Based Cytoophidium Structures as Potential Theranostics in Cancer.

Authors:  Gerson Dierley Keppeke; Luis Eduardo Coelho Andrade; Denise Barcelos; Mariana Fernandes; Gilles Landman
Journal:  Mol Ther       Date:  2020-06-11       Impact factor: 11.454

Review 3.  GTP metabolic reprogramming by IMPDH2: unlocking cancer cells' fuelling mechanism.

Authors:  Satoshi Kofuji; Atsuo T Sasaki
Journal:  J Biochem       Date:  2020-10-01       Impact factor: 3.387

4.  The Bateman domain of IMP dehydrogenase is a binding target for dinucleoside polyphosphates.

Authors:  David Fernández-Justel; Rafael Peláez; José Luis Revuelta; Rubén M Buey
Journal:  J Biol Chem       Date:  2019-08-15       Impact factor: 5.157

5.  Molecular crowding facilitates bundling of IMPDH polymers and cytoophidium formation.

Authors:  Chia-Chun Chang; Min Peng; Jiale Zhong; Ziheng Zhang; Gerson Dierley Keppeke; Li-Ying Sung; Ji-Long Liu
Journal:  Cell Mol Life Sci       Date:  2022-07-14       Impact factor: 9.207

6.  A Streamlined Data Analysis Pipeline for the Identification of Sites of Citrullination.

Authors:  Aaron J Maurais; Ari J Salinger; Micaela Tobin; Scott A Shaffer; Eranthie Weerapana; Paul R Thompson
Journal:  Biochemistry       Date:  2021-09-07       Impact factor: 3.321

Review 7.  Compartmentalization and regulation of GTP in control of cellular phenotypes.

Authors:  David W Wolff; Anna Bianchi-Smiraglia; Mikhail A Nikiforov
Journal:  Trends Mol Med       Date:  2022-06-16       Impact factor: 15.272

8.  IMPDH1 retinal variants control filament architecture to tune allosteric regulation.

Authors:  Anika L Burrell; Chuankai Nie; Meerit Said; Jacqueline C Simonet; David Fernández-Justel; Matthew C Johnson; Joel Quispe; Rubén M Buey; Jeffrey R Peterson; Justin M Kollman
Journal:  Nat Struct Mol Biol       Date:  2022-01-10       Impact factor: 18.361

Review 9.  Anti-Tumor Potential of IMP Dehydrogenase Inhibitors: A Century-Long Story.

Authors:  Rand Naffouje; Punita Grover; Hongyang Yu; Arun Sendilnathan; Kara Wolfe; Nazanin Majd; Eric P Smith; Koh Takeuchi; Toshiya Senda; Satoshi Kofuji; Atsuo T Sasaki
Journal:  Cancers (Basel)       Date:  2019-09-11       Impact factor: 6.639

10.  Freedom of assembly: metabolic enzymes come together.

Authors:  Jacqueline C Simonet; Anika L Burrell; Justin M Kollman; Jeffrey R Peterson
Journal:  Mol Biol Cell       Date:  2020-06-01       Impact factor: 4.138

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