Literature DB >> 35013599

IMPDH1 retinal variants control filament architecture to tune allosteric regulation.

Anika L Burrell1, Chuankai Nie1,2, Meerit Said1, Jacqueline C Simonet3,4, David Fernández-Justel5, Matthew C Johnson1,6, Joel Quispe1, Rubén M Buey5, Jeffrey R Peterson3, Justin M Kollman7.   

Abstract

Inosine-5'-monophosphate dehydrogenase (IMPDH), a key regulatory enzyme in purine nucleotide biosynthesis, dynamically assembles filaments in response to changes in metabolic demand. Humans have two isoforms: IMPDH2 filaments reduce sensitivity to feedback inhibition, while IMPDH1 assembly remains uncharacterized. IMPDH1 plays a unique role in retinal metabolism, and point mutants cause blindness. Here, in a series of cryogenic-electron microscopy structures we show that human IMPDH1 assembles polymorphic filaments with different assembly interfaces in extended and compressed states. Retina-specific splice variants introduce structural elements that reduce sensitivity to GTP inhibition, including stabilization of the extended filament form. Finally, we show that IMPDH1 disease mutations fall into two classes: one disrupts GTP regulation and the other has no effect on GTP regulation or filament assembly. These findings provide a foundation for understanding the role of IMPDH1 in retinal function and disease and demonstrate the diverse mechanisms by which metabolic enzyme filaments are allosterically regulated.
© 2022. The Author(s), under exclusive licence to Springer Nature America, Inc.

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Year:  2022        PMID: 35013599      PMCID: PMC9044917          DOI: 10.1038/s41594-021-00706-2

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   18.361


  64 in total

1.  On the role of IMPDH1 in retinal degeneration.

Authors:  Avril Kennan; Aileen Aherne; Sara J Bowne; Stephen P Daiger; G Jane Farrar; Paul F Kenna; Pete Humphries
Journal:  Adv Exp Med Biol       Date:  2003       Impact factor: 2.622

2.  IMP dehydrogenase, an enzyme linked with proliferation and malignancy.

Authors:  R C Jackson; G Weber; H P Morris
Journal:  Nature       Date:  1975-07-24       Impact factor: 49.962

Review 3.  Molecular cell biology and immunobiology of mammalian rod/ring structures.

Authors:  Wendy C Carcamo; S John Calise; Carlos A von Mühlen; Minoru Satoh; Edward K L Chan
Journal:  Int Rev Cell Mol Biol       Date:  2014       Impact factor: 6.813

4.  Regulation of the interaction of inosine monophosphate dehydrogenase with mycophenolic Acid by GTP.

Authors:  YanShan Ji; Jingjin Gu; Alexander M Makhov; Jack D Griffith; Beverly S Mitchell
Journal:  J Biol Chem       Date:  2005-10-21       Impact factor: 5.157

5.  Glutamine deprivation initiates reversible assembly of mammalian rods and rings.

Authors:  S John Calise; Wendy C Carcamo; Claire Krueger; Joyce D Yin; Daniel L Purich; Edward K L Chan
Journal:  Cell Mol Life Sci       Date:  2014-01-30       Impact factor: 9.261

6.  Tissue-differential expression of two distinct genes for human IMP dehydrogenase (E.C.1.1.1.205).

Authors:  M Senda; Y Natsumeda
Journal:  Life Sci       Date:  1994       Impact factor: 5.037

7.  A Nucleotide-Dependent Conformational Switch Controls the Polymerization of Human IMP Dehydrogenases to Modulate their Catalytic Activity.

Authors:  David Fernández-Justel; Rafael Núñez; Jaime Martín-Benito; David Jimeno; Adrián González-López; Eva María Soriano; José Luis Revuelta; Rubén M Buey
Journal:  J Mol Biol       Date:  2019-01-18       Impact factor: 5.469

8.  Characterization of human type I and type II IMP dehydrogenases.

Authors:  S F Carr; E Papp; J C Wu; Y Natsumeda
Journal:  J Biol Chem       Date:  1993-12-25       Impact factor: 5.157

9.  Immune Response-Dependent Assembly of IMP Dehydrogenase Filaments.

Authors:  S John Calise; Georges Abboud; Hideko Kasahara; Laurence Morel; Edward K L Chan
Journal:  Front Immunol       Date:  2018-11-29       Impact factor: 7.561

10.  Cryo-EM structures demonstrate human IMPDH2 filament assembly tunes allosteric regulation.

Authors:  Matthew C Johnson; Justin M Kollman
Journal:  Elife       Date:  2020-01-30       Impact factor: 8.140

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  3 in total

Review 1.  IMPDH dysregulation in disease: a mini review.

Authors:  Anika L Burrell; Justin M Kollman
Journal:  Biochem Soc Trans       Date:  2022-02-28       Impact factor: 4.919

2.  Diversity of mechanisms to control bacterial GTP homeostasis by the mutually exclusive binding of adenine and guanine nucleotides to IMP dehydrogenase.

Authors:  David Fernández-Justel; Íñigo Marcos-Alcalde; Federico Abascal; Nerea Vidaña; Paulino Gómez-Puertas; Alberto Jiménez; José L Revuelta; Rubén M Buey
Journal:  Protein Sci       Date:  2022-05       Impact factor: 6.993

Review 3.  The gateway to guanine nucleotides: Allosteric regulation of IMP dehydrogenases.

Authors:  Rubén M Buey; David Fernández-Justel; Alberto Jiménez; José L Revuelta
Journal:  Protein Sci       Date:  2022-09       Impact factor: 6.993

  3 in total

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