Literature DB >> 35833994

Molecular crowding facilitates bundling of IMPDH polymers and cytoophidium formation.

Chia-Chun Chang1,2, Min Peng2, Jiale Zhong1, Ziheng Zhang1, Gerson Dierley Keppeke1,3, Li-Ying Sung2,4, Ji-Long Liu5,6.   

Abstract

The cytoophidium is a unique type of membraneless compartment comprising of filamentous protein polymers. Inosine monophosphate dehydrogenase (IMPDH) catalyzes the rate-limiting step of de novo GTP biosynthesis and plays critical roles in active cell metabolism. However, the molecular regulation of cytoophidium formation is poorly understood. Here we show that human IMPDH2 polymers bundle up to form cytoophidium-like aggregates in vitro when macromolecular crowders are present. The self-association of IMPDH polymers is suggested to rely on electrostatic interactions. In cells, the increase of molecular crowding with hyperosmotic medium induces cytoophidia, while the decrease of that by the inhibition of RNA synthesis perturbs cytoophidium assembly. In addition to IMPDH, CTPS and PRPS cytoophidium could be also induced by hyperosmolality, suggesting a universal phenomenon of cytoophidium-forming proteins. Finally, our results indicate that the cytoophidium can prolong the half-life of IMPDH, which is proposed to be one of conserved functions of this subcellular compartment.
© 2022. The Author(s), under exclusive licence to Springer Nature Switzerland AG.

Entities:  

Keywords:  Cellular compartmentalization; Cytoophidium; IMPDH; Membraneless organelle; Molecular crowding

Mesh:

Substances:

Year:  2022        PMID: 35833994     DOI: 10.1007/s00018-022-04448-2

Source DB:  PubMed          Journal:  Cell Mol Life Sci        ISSN: 1420-682X            Impact factor:   9.207


  53 in total

1.  Conformation of the nuclear pore in living cells is modulated by transport state.

Authors:  Joan Pulupa; Harriet Prior; Daniel S Johnson; Sanford M Simon
Journal:  Elife       Date:  2020-12-21       Impact factor: 8.140

Review 2.  The Cytoophidium and Its Kind: Filamentation and Compartmentation of Metabolic Enzymes.

Authors:  Ji-Long Liu
Journal:  Annu Rev Cell Dev Biol       Date:  2016-06-27       Impact factor: 13.827

3.  Induction of cytoplasmic rods and rings structures by inhibition of the CTP and GTP synthetic pathway in mammalian cells.

Authors:  Wendy C Carcamo; Minoru Satoh; Hideko Kasahara; Naohiro Terada; Takashi Hamazaki; Jason Y F Chan; Bing Yao; Stephanie Tamayo; Giovanni Covini; Carlos A von Mühlen; Edward K L Chan
Journal:  PLoS One       Date:  2011-12-29       Impact factor: 3.240

4.  Human CTP synthase filament structure reveals the active enzyme conformation.

Authors:  Eric M Lynch; Derrick R Hicks; Matthew Shepherd; James A Endrizzi; Allison Maker; Jesse M Hansen; Rachael M Barry; Zemer Gitai; Enoch P Baldwin; Justin M Kollman
Journal:  Nat Struct Mol Biol       Date:  2017-05-01       Impact factor: 15.369

5.  IMP/GTP balance modulates cytoophidium assembly and IMPDH activity.

Authors:  Gerson Dierley Keppeke; Chia Chun Chang; Min Peng; Li-Yu Chen; Wei-Cheng Lin; Li-Mei Pai; Luis Eduardo Coelho Andrade; Li-Ying Sung; Ji-Long Liu
Journal:  Cell Div       Date:  2018-06-15       Impact factor: 5.130

6.  Forming cytoophidia prolongs the half-life of CTP synthase.

Authors:  Zhe Sun; Ji-Long Liu
Journal:  Cell Discov       Date:  2019-06-18       Impact factor: 10.849

7.  Coupled structural transitions enable highly cooperative regulation of human CTPS2 filaments.

Authors:  Eric M Lynch; Justin M Kollman
Journal:  Nat Struct Mol Biol       Date:  2019-12-23       Impact factor: 15.369

8.  Histidine-Dependent Protein Methylation Is Required for Compartmentalization of CTP Synthase.

Authors:  Wei-Cheng Lin; Archan Chakraborty; Shih-Chia Huang; Pei-Yu Wang; Ya-Ju Hsieh; Kun-Yi Chien; Yen-Hsien Lee; Chia-Chun Chang; Hsiang-Yu Tang; Yu-Tsun Lin; Chang-Shung Tung; Ji-Dung Luo; Ting-Wen Chen; Tzu-Yang Lin; Mei-Ling Cheng; Yi-Ting Chen; Chau-Ting Yeh; Ji-Long Liu; Li-Ying Sung; Ming-Shi Shiao; Jau-Song Yu; Yu-Sun Chang; Li-Mei Pai
Journal:  Cell Rep       Date:  2018-09-04       Impact factor: 9.423

9.  Cytoophidium assembly reflects upregulation of IMPDH activity.

Authors:  Chia-Chun Chang; Wei-Cheng Lin; Li-Mei Pai; Hsuan-Shu Lee; Shinn-Chih Wu; Shih-Torng Ding; Ji-Long Liu; Li-Ying Sung
Journal:  J Cell Sci       Date:  2015-08-24       Impact factor: 5.285

10.  Filamentation of asparagine synthetase in Saccharomyces cerevisiae.

Authors:  Shanshan Zhang; Kang Ding; Qing-Ji Shen; Suwen Zhao; Ji-Long Liu
Journal:  PLoS Genet       Date:  2018-10-26       Impact factor: 5.917

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  1 in total

1.  Super-Resolution Imaging Reveals Dynamic Reticular Cytoophidia.

Authors:  Yi-Fan Fang; Yi-Lan Li; Xiao-Ming Li; Ji-Long Liu
Journal:  Int J Mol Sci       Date:  2022-10-02       Impact factor: 6.208

  1 in total

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