Literature DB >> 30664776

An online resource for GPCR structure determination and analysis.

Christian Munk1, Eshita Mutt2, Vignir Isberg3,4, Louise F Nikolajsen3, Janne M Bibbe3, Tilman Flock2, Michael A Hanson5, Raymond C Stevens6,7, Xavier Deupi2, David E Gloriam8.   

Abstract

G-protein-coupled receptors (GPCRs) transduce physiological and sensory stimuli into appropriate cellular responses and mediate the actions of one-third of drugs. GPCR structural studies have revealed the general bases of receptor activation, signaling, drug action and allosteric modulation, but so far cover only 13% of nonolfactory receptors. We broadly surveyed the receptor modifications/engineering and methods used to produce all available GPCR crystal and cryo-electron microscopy (cryo-EM) structures, and present an interactive resource integrated in GPCRdb ( http://www.gpcrdb.org ) to assist users in designing constructs and browsing appropriate experimental conditions for structure studies.

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Year:  2019        PMID: 30664776      PMCID: PMC6881186          DOI: 10.1038/s41592-018-0302-x

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  50 in total

1.  Origin of the different strengths of the (i,i+4) and (i,i+3) leucine pair interactions in helices.

Authors:  Peizhi Luo; Robert L Baldwin
Journal:  Biophys Chem       Date:  2002-05-02       Impact factor: 2.352

2.  Conformational equilibria of light-activated rhodopsin in nanodiscs.

Authors:  Ned Van Eps; Lydia N Caro; Takefumi Morizumi; Ana Karin Kusnetzow; Michal Szczepek; Klaus Peter Hofmann; Timothy H Bayburt; Stephen G Sligar; Oliver P Ernst; Wayne L Hubbell
Journal:  Proc Natl Acad Sci U S A       Date:  2017-04-03       Impact factor: 11.205

Review 3.  Applying Structure-Based Drug Design Approaches to Allosteric Modulators of GPCRs.

Authors:  Miles Congreve; Christine Oswald; Fiona H Marshall
Journal:  Trends Pharmacol Sci       Date:  2017-06-22       Impact factor: 14.819

Review 4.  Structure-function of the G protein-coupled receptor superfamily.

Authors:  Vsevolod Katritch; Vadim Cherezov; Raymond C Stevens
Journal:  Annu Rev Pharmacol Toxicol       Date:  2012-11-08       Impact factor: 13.820

5.  Phase-plate cryo-EM structure of a biased agonist-bound human GLP-1 receptor-Gs complex.

Authors:  Yi-Lynn Liang; Maryam Khoshouei; Alisa Glukhova; Sebastian G B Furness; Peishen Zhao; Lachlan Clydesdale; Cassandra Koole; Tin T Truong; David M Thal; Saifei Lei; Mazdak Radjainia; Radostin Danev; Wolfgang Baumeister; Ming-Wei Wang; Laurence J Miller; Arthur Christopoulos; Patrick M Sexton; Denise Wootten
Journal:  Nature       Date:  2018-02-21       Impact factor: 49.962

Review 6.  Large-scale production and protein engineering of G protein-coupled receptors for structural studies.

Authors:  Dalibor Milić; Dmitry B Veprintsev
Journal:  Front Pharmacol       Date:  2015-03-31       Impact factor: 5.810

7.  In vitro expression and analysis of the 826 human G protein-coupled receptors.

Authors:  Xuechen Lv; Junlin Liu; Qiaoyun Shi; Qiwen Tan; Dong Wu; John J Skinner; Angela L Walker; Lixia Zhao; Xiangxiang Gu; Na Chen; Lu Xue; Pei Si; Lu Zhang; Zeshi Wang; Vsevolod Katritch; Zhi-Jie Liu; Raymond C Stevens
Journal:  Protein Cell       Date:  2016-04-16       Impact factor: 14.870

8.  SIFTS: Structure Integration with Function, Taxonomy and Sequences resource.

Authors:  Sameer Velankar; José M Dana; Julius Jacobsen; Glen van Ginkel; Paul J Gane; Jie Luo; Thomas J Oldfield; Claire O'Donovan; Maria-Jesus Martin; Gerard J Kleywegt
Journal:  Nucleic Acids Res       Date:  2012-11-29       Impact factor: 16.971

9.  Phase-plate cryo-EM structure of a class B GPCR-G-protein complex.

Authors:  Yi-Lynn Liang; Maryam Khoshouei; Mazdak Radjainia; Yan Zhang; Alisa Glukhova; Jeffrey Tarrasch; David M Thal; Sebastian G B Furness; George Christopoulos; Thomas Coudrat; Radostin Danev; Wolfgang Baumeister; Laurence J Miller; Arthur Christopoulos; Brian K Kobilka; Denise Wootten; Georgios Skiniotis; Patrick M Sexton
Journal:  Nature       Date:  2017-04-24       Impact factor: 49.962

10.  Crystal structure of rhodopsin in complex with a mini-Go sheds light on the principles of G protein selectivity.

Authors:  Ching-Ju Tsai; Filip Pamula; Rony Nehmé; Jonas Mühle; Tobias Weinert; Tilman Flock; Przemyslaw Nogly; Patricia C Edwards; Byron Carpenter; Thomas Gruhl; Pikyee Ma; Xavier Deupi; Jörg Standfuss; Christopher G Tate; Gebhard F X Schertler
Journal:  Sci Adv       Date:  2018-09-19       Impact factor: 14.136

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  36 in total

1.  Structural basis of ligand recognition and self-activation of orphan GPR52.

Authors:  Xi Lin; Mingyue Li; Niandong Wang; Yiran Wu; Zhipu Luo; Shimeng Guo; Gye-Won Han; Shaobai Li; Yang Yue; Xiaohu Wei; Xin Xie; Yong Chen; Suwen Zhao; Jian Wu; Ming Lei; Fei Xu
Journal:  Nature       Date:  2020-02-19       Impact factor: 49.962

2.  The European Research Network on Signal Transduction (ERNEST): Toward a Multidimensional Holistic Understanding of G Protein-Coupled Receptor Signaling.

Authors:  Martha E Sommer; Jana Selent; Jens Carlsson; Chris De Graaf; David E Gloriam; Gyorgy M Keseru; Mickey Kosloff; Stefan Mordalski; Aurelien Rizk; Mette M Rosenkilde; Eddy Sotelo; Johanna K S Tiemann; Andrew Tobin; Nina Vardjan; Maria Waldhoer; Peter Kolb
Journal:  ACS Pharmacol Transl Sci       Date:  2020-03-31

3.  Allosteric modulation of β-cell M3 muscarinic acetylcholine receptors greatly improves glucose homeostasis in lean and obese mice.

Authors:  Lu Zhu; Mario Rossi; Amanda Cohen; Jonathan Pham; Hongchao Zheng; Diptadip Dattaroy; Taro Mukaibo; James E Melvin; Jennifer L Langel; Samer Hattar; Franz M Matschinsky; Daniel H Appella; Nicolai M Doliba; Jürgen Wess
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-26       Impact factor: 11.205

Review 4.  GPCRomics: An Approach to Discover GPCR Drug Targets.

Authors:  Paul A Insel; Krishna Sriram; Matthew W Gorr; Shu Z Wiley; Alexander Michkov; Cristina Salmerón; Amy M Chinn
Journal:  Trends Pharmacol Sci       Date:  2019-05-08       Impact factor: 14.819

Review 5.  AlphaFold2 versus experimental structures: evaluation on G protein-coupled receptors.

Authors:  Xin-Heng He; Chong-Zhao You; Hua-Liang Jiang; Yi Jiang; H Eric Xu; Xi Cheng
Journal:  Acta Pharmacol Sin       Date:  2022-07-01       Impact factor: 6.150

6.  Mechanistic Insights into Specific G Protein Interactions with Adenosine Receptors.

Authors:  Jinan Wang; Yinglong Miao
Journal:  J Phys Chem B       Date:  2019-07-22       Impact factor: 2.991

7.  A G protein-coupled receptor-like module regulates cellulose synthase secretion from the endomembrane system in Arabidopsis.

Authors:  Heather E McFarlane; Daniela Mutwil-Anderwald; Jana Verbančič; Kelsey L Picard; Timothy E Gookin; Anja Froehlich; David Chakravorty; Luisa M Trindade; Jose M Alonso; Sarah M Assmann; Staffan Persson
Journal:  Dev Cell       Date:  2021-04-19       Impact factor: 12.270

Review 8.  Trends in application of advancing computational approaches in GPCR ligand discovery.

Authors:  Siyu Zhu; Meixian Wu; Ziwei Huang; Jing An
Journal:  Exp Biol Med (Maywood)       Date:  2021-02-27

9.  Correlated Motions of Conserved Polar Motifs Lay out a Plausible Mechanism of G Protein-Coupled Receptor Activation.

Authors:  Argha Mitra; Arijit Sarkar; Márton Richárd Szabó; Attila Borics
Journal:  Biomolecules       Date:  2021-04-30

10.  Homology Modeling of Class A G-Protein-Coupled Receptors in the Age of the Structure Boom.

Authors:  Asma Tiss; Rym Ben Boubaker; Daniel Henrion; Hajer Guissouma; Marie Chabbert
Journal:  Methods Mol Biol       Date:  2021
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