Literature DB >> 33946214

Correlated Motions of Conserved Polar Motifs Lay out a Plausible Mechanism of G Protein-Coupled Receptor Activation.

Argha Mitra1, Arijit Sarkar1, Márton Richárd Szabó1,2, Attila Borics1.   

Abstract

Recent advancements in the field of experimental structural biology have provided high-resolution structures of active and inactive state G protein-coupled receptors (GPCRs), a highly important pharmaceutical target family, but the process of transition between these states is poorly understood. According to the current theory, GPCRs exist in structurally distinct, dynamically interconverting functional states of which populations are shifted upon binding of ligands and intracellular signaling proteins. However, explanation of the activation mechanism, on an entirely structural basis, gets complicated when multiple activation pathways and active receptor states are considered. Our unbiased, atomistic molecular dynamics simulations of the μ opioid receptor (MOP) revealed that transmission of external stimulus to the intracellular surface of the receptor is accompanied by subtle, concerted movements of highly conserved polar amino acid side chains along the 7th transmembrane helix. This may entail the rearrangement of polar species and the shift of macroscopic polarization in the transmembrane domain, triggered by agonist binding. Based on our observations and numerous independent indications, we suggest amending the widely accepted theory that the initiation event of GPCR activation is the shift of macroscopic polarization between the ortho- and allosteric binding pockets and the intracellular G protein-binding interface.

Entities:  

Keywords:  GPCR; activation mechanism; molecular dynamics; opioid; signal transduction

Year:  2021        PMID: 33946214     DOI: 10.3390/biom11050670

Source DB:  PubMed          Journal:  Biomolecules        ISSN: 2218-273X


  52 in total

1.  Crystal structure of rhodopsin: A G protein-coupled receptor.

Authors:  K Palczewski; T Kumasaka; T Hori; C A Behnke; H Motoshima; B A Fox; I Le Trong; D C Teller; T Okada; R E Stenkamp; M Yamamoto; M Miyano
Journal:  Science       Date:  2000-08-04       Impact factor: 47.728

2.  Generalized correlation for biomolecular dynamics.

Authors:  Oliver F Lange; Helmut Grubmüller
Journal:  Proteins       Date:  2006-03-01

3.  Fluid phase lipid areas and bilayer thicknesses of commonly used phosphatidylcholines as a function of temperature.

Authors:  Norbert Kučerka; Mu-Ping Nieh; John Katsaras
Journal:  Biochim Biophys Acta       Date:  2011-07-23

Review 4.  Insights into the function of opioid receptors from molecular dynamics simulations of available crystal structures.

Authors:  Kristen A Marino; Yi Shang; Marta Filizola
Journal:  Br J Pharmacol       Date:  2017-04-12       Impact factor: 8.739

5.  Molecular control of δ-opioid receptor signalling.

Authors:  Gustavo Fenalti; Patrick M Giguere; Vsevolod Katritch; Xi-Ping Huang; Aaron A Thompson; Vadim Cherezov; Bryan L Roth; Raymond C Stevens
Journal:  Nature       Date:  2014-01-12       Impact factor: 49.962

6.  Opiate agonists and antagonists discriminated by receptor binding in brain.

Authors:  C B Pert; G Pasternak; S H Snyder
Journal:  Science       Date:  1973-12-28       Impact factor: 47.728

7.  Functional role of the spatial proximity of Asp114(2.50) in TMH 2 and Asn332(7.49) in TMH 7 of the mu opioid receptor.

Authors:  W Xu; F Ozdener; J G Li; C Chen; J K de Riel; H Weinstein; L Y Liu-Chen
Journal:  FEBS Lett       Date:  1999-03-26       Impact factor: 4.124

8.  Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.

Authors:  W Kabsch; C Sander
Journal:  Biopolymers       Date:  1983-12       Impact factor: 2.505

9.  Structural basis for allosteric regulation of GPCRs by sodium ions.

Authors:  Wei Liu; Eugene Chun; Aaron A Thompson; Pavel Chubukov; Fei Xu; Vsevolod Katritch; Gye Won Han; Christopher B Roth; Laura H Heitman; Adriaan P IJzerman; Vadim Cherezov; Raymond C Stevens
Journal:  Science       Date:  2012-07-13       Impact factor: 47.728

10.  Crystal structure of the µ-opioid receptor bound to a morphinan antagonist.

Authors:  Aashish Manglik; Andrew C Kruse; Tong Sun Kobilka; Foon Sun Thian; Jesper M Mathiesen; Roger K Sunahara; Leonardo Pardo; William I Weis; Brian K Kobilka; Sébastien Granier
Journal:  Nature       Date:  2012-03-21       Impact factor: 49.962

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  1 in total

1.  Universal Properties and Specificities of the β2-Adrenergic Receptor-Gs Protein Complex Activation Mechanism Revealed by All-Atom Molecular Dynamics Simulations.

Authors:  Argha Mitra; Arijit Sarkar; Attila Borics
Journal:  Int J Mol Sci       Date:  2021-09-27       Impact factor: 5.923

  1 in total

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