| Literature DB >> 30636020 |
Hidehito Oyanagi1, Yoshifumi Shimada1, Masayuki Nagahashi1, Hiroshi Ichikawa1, Yosuke Tajima1, Kaoru Abe1, Masato Nakano1, Hitoshi Kameyama1, Yasumasa Takii2, Takashi Kawasaki3, Kei-Ichi Homma3, Yiwei Ling4, Shujiro Okuda4, Kazuaki Takabe5,6,7,8, Toshifumi Wakai1.
Abstract
AIMS: SMAD4 acts as a tumour suppressor, and the loss of SMAD4 is associated with poor prognosis in colorectal cancer (CRC) patients. Although next-generation sequencing (NGS) enabled us to detect numerous genetic alterations in a single assay, the clinical significance of SMAD4 alteration detected with NGS has not been fully investigated. The aim of this study was to evaluate the clinicopathological characteristics and clinical significance of SMAD4 alteration detected with NGS in CRC. METHODS ANDEntities:
Keywords: Crohn-like lymphoid reaction; SMAD4; TGF-β; colorectal cancer; genetic alteration; immunohistochemistry; next-generation sequencing; poorly differentiated cluster
Mesh:
Substances:
Year: 2019 PMID: 30636020 PMCID: PMC6849740 DOI: 10.1111/his.13805
Source DB: PubMed Journal: Histopathology ISSN: 0309-0167 Impact factor: 5.087
SMAD4 status and other clinicopathological characteristics
| Variable |
|
| |
|---|---|---|---|
| Wild | Altered | ||
| Age (years) | |||
| <65 | 68 (34) | 32 (16) | 0.211 |
| ≥65 | 77 (38) | 24 (12) | |
| Sex | |||
| Male | 80 (40) | 37 (18) | 0.202 |
| Female | 65 (32) | 19 (10) | |
| Location | |||
| Right side | 37 (18) | 19 (10) | 0.292 |
| Left side | 108 (54) | 37 (18) | |
| Tumour size (mm) | |||
| <50 | 73 (36) | 15 (8) |
|
| ≥50 | 72 (36) | 41 (20) | |
| T category | |||
| T1, T2 | 22 (11) | 2 (1) |
|
| T3, T4 | 123 (61) | 54 (27) | |
| Histopathological grading | |||
| G1, G2 | 105 (52) | 42 (21) | 0.859 |
| G3 | 40 (20) | 14 (7) | |
| Lymphatic invasion | |||
| Absence | 61 (30) | 18 (9) | 0.259 |
| Presence | 84 (42) | 38 (19) | |
| Venous invasion | |||
| Absence | 40 (20) | 8 (4) | 0.064 |
| Presence | 105 (52) | 48 (24) | |
| N category | |||
| N0 | 49 (24) | 10 (5) |
|
| N1, N2 | 96 (48) | 46 (23) | |
| M category | |||
| M0 | 72 (36) | 18 (9) |
|
| M1 | 73 (36) | 38 (19) | |
| Tumour budding | |||
| Bd1, Bd2 | 118 (59) | 40 (20) | 0.129 |
| Bd3 | 27 (13) | 16 (8) | |
| Tumour budding | |||
| Bd1 | 67 (33) | 22 (11) | 0.430 |
| Bd2, Bd3 | 78 (39) | 34 (17) | |
| Poorly differentiated cluster | |||
| G1, G2 | 102 (51) | 29 (14) |
|
| G3 | 43 (21) | 27 (14) | |
| Microsatellite instability | |||
| High | 14 (7) | 1 (1) | 0.072 |
| Stable | 131 (65) | 55 (27) | |
| Medullary type | |||
| Presence | 3 (2) | 2 (1) | 0.620 |
| Absence | 142 (70) | 54 (27) | |
| Mucinous type | |||
| Presence | 9 (4) | 6 (3) | 0.368 |
| Absence | 136 (68) | 50 (25) | |
| Crohn‐like lymphoid reaction | |||
| Presence | 29 (14) | 2 (1) |
|
| Absence | 116 (58) | 54 (27) | |
| Tumour‐infiltrating lymphocytes | |||
| Presence | 27 (14) | 9 (4) | 0.838 |
| Absence | 118 (59) | 47 (23) | |
|
| |||
| Wild‐type | 105 (52) | 37 (18) | 0.392 |
| Mutant | 40 (20) | 19 (10) | |
|
| |||
| Wild‐type | 144 (71) | 56 (28) | 0.999 |
| Mutant | 1 (1) | 0 (0) | |
|
| |||
| Wild‐type | 136 (68) | 52 (26) | 0.758 |
| Mutant | 9 (4) | 4 (2) | |
|
| |||
| Wild‐type | 142 (71) | 37 (18) |
|
| Mutant/deleted | 3 (2) | 19 (9) | |
Fisher's exact test.
Bold type means P‐value <0.05.
Cut‐off value: 10 lymphocytes per five high‐power fields.
Figure 1Comparison of the prevalence and spectrum of mutations between the Japanese cohort and The Cancer Genome Atlas (TCGA) data. A, Japanese samples. B, TCGA samples.
Figure 2Comparison of the frequency of genetic alterations in the transforming growth factor‐β pathway between the Japanese cohort and The Cancer Genome Atlas data.
Figure 3Poorly differentiated clusters. Haematoxylin and eosin staining. [Colour figure can be viewed at http://wileyonlinelibrary.com]
Figure 4Patterns of SMAD4 expression in colorectal cancer: anti‐SMAD4 staining. A, Strong expression. B, Weak expression. C, Complete loss (note positive stromal cells and normal epithelial cells). D, Clonal loss. [Colour figure can be viewed at http://wileyonlinelibrary.com]
Comparison between SMAD4 gene and SMAD4 immunohistochemistry (IHC) statuses
|
| ||
|---|---|---|
| Wild‐type | Altered | |
| SMAD4 IHC status | ||
| Strong/weak | 119 (60) | 37 (18) |
| Loss | 26 (13) | 19 (9) |
Fisher's exact test.
N = 201, P = 0.023.
Nineteen patients with both SMAD4 alteration and loss of SMAD4 expression
| Case no. |
| SMAD4 IHC status | Percentage of SMAD4 loss area |
|---|---|---|---|
| 1 | Deleted | Loss | 30 |
| 2 | Deleted | Loss | 100 |
| 3 | Deleted | Loss | 80 |
| 4 | Deleted | Loss | 100 |
| 5 | Deleted, R515I | Loss | 30 |
| 6 | G510R | Loss | 10 |
| 7 | Deleted | Loss | 80 |
| 8 | Deleted, E33X | Loss | 100 |
| 9 | Deleted | Loss | 90 |
| 10 | G491fs | Loss | 95 |
| 11 | Deleted | Loss | 100 |
| 12 | 413_416del, F408fs | Loss | 100 |
| 13 | Deleted | Loss | 100 |
| 14 | Deleted | Loss | 20 |
| 15 | W302X | Loss | 100 |
| 16 | Deleted | Loss | 20 |
| 17 | Deleted | Loss | 20 |
| 18 | L109fs | Loss | 100 |
| 19 | G86V | Loss | 100 |
IHC, immunohistochemistry.
Figure 5Kaplan–Meier curves of overall survival and relapse‐free survival for stage I–III patients. [Colour figure can be viewed at http://wileyonlinelibrary.com]
Figure 6Kaplan–Meier curves of overall survival. A, Stage I–III patients. B, Stage IV patients. [Colour figure can be viewed at http://wileyonlinelibrary.com]