Literature DB >> 30618247

Solid-State NMR and MD Study of the Structure of the Statherin Mutant SNa15 on Mineral Surfaces.

Erika L Buckle1, Arushi Prakash2, Massimiliano Bonomi3, Janani Sampath2, Jim Pfaendtner2, Gary P Drobny1.   

Abstract

Elucidation of the structure and interactions of proteins at native mineral interfaces is key to understanding how biological systems regulate the formation of hard tissue structures. In addition, understanding how these same proteins interact with non-native mineral surfaces has important implications for the design of medical and dental implants, chromatographic supports, diagnostic tools, and a host of other applications. Here, we combine solid-state NMR spectroscopy, isotherm measurements, and molecular dynamics simulations to study how SNa15, a peptide derived from the hydroxyapatite (HAP) recognition domain of the biomineralization protein statherin, interacts with HAP, silica (SiO2), and titania (TiO2) mineral surfaces. Adsorption isotherms are used to characterize the binding affinity of SNa15 to HAP, SiO2, and TiO2. We also apply 1D 13C CP MAS, 1D 15N CP MAS, and 2D 13C-13C DARR experiments to SNa15 samples with uniformly 13C- and 15N-enriched residues to determine backbone and side-chain chemical shifts. Different computational tools, namely TALOS-N and molecular dynamics simulations, are used to deduce secondary structure from backbone and side-chain chemical shift data. Our results show that SNa15 adopts an α-helical conformation when adsorbed to HAP and TiO2, but the helix largely unravels upon adsorption to SiO2. Interactions with HAP are mediated in general by acidic and some basic amino acids, although the specific amino acids involved in direct surface interaction vary with surface. The integrated experimental and computational approach used in this study is able to provide high-resolution insights into adsorption of proteins on interfaces.

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Year:  2019        PMID: 30618247      PMCID: PMC6785181          DOI: 10.1021/jacs.8b10990

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  61 in total

1.  Efficient reconstruction of complex free energy landscapes by multiple walkers metadynamics.

Authors:  Paolo Raiteri; Alessandro Laio; Francesco Luigi Gervasio; Cristian Micheletti; Michele Parrinello
Journal:  J Phys Chem B       Date:  2006-03-02       Impact factor: 2.991

2.  Solution- and adsorbed-state structural ensembles predicted for the statherin-hydroxyapatite system.

Authors:  David L Masica; Jeffrey J Gray
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

3.  Toward a structure determination method for biomineral-associated protein using combined solid- state NMR and computational structure prediction.

Authors:  David L Masica; Jason T Ash; Moise Ndao; Gary P Drobny; Jeffrey J Gray
Journal:  Structure       Date:  2010-12-08       Impact factor: 5.006

Review 4.  The role of dynamic conformational ensembles in biomolecular recognition.

Authors:  David D Boehr; Ruth Nussinov; Peter E Wright
Journal:  Nat Chem Biol       Date:  2009-11       Impact factor: 15.040

5.  Osteopontin-hydroxyapatite interactions in vitro: inhibition of hydroxyapatite formation and growth in a gelatin-gel.

Authors:  A L Boskey; M Maresca; W Ullrich; S B Doty; W T Butler; C W Prince
Journal:  Bone Miner       Date:  1993-08

Review 6.  The structure, dynamics, and energetics of protein adsorption-lessons learned from adsorption of statherin to hydroxyapatite.

Authors:  Gil Goobes; Rivka Goobes; Wendy J Shaw; James M Gibson; Joanna R Long; Vinodhkumar Raghunathan; Ora Schueler-Furman; Jennifer M Popham; David Baker; Charles T Campbell; Patrick S Stayton; Gary P Drobny
Journal:  Magn Reson Chem       Date:  2007-12       Impact factor: 2.447

7.  Chemical shift referencing in MAS solid state NMR.

Authors:  Corey R Morcombe; Kurt W Zilm
Journal:  J Magn Reson       Date:  2003-06       Impact factor: 2.229

8.  Delineation of conformational preferences in human salivary statherin by 1H, 31P NMR and CD studies: sequential assignment and structure-function correlations.

Authors:  G A Naganagowda; T L Gururaja; M J Levine
Journal:  J Biomol Struct Dyn       Date:  1998-08

9.  Solid-state NMR studies of biomineralization peptides and proteins.

Authors:  Adrienne Roehrich; Gary Drobny
Journal:  Acc Chem Res       Date:  2013-08-09       Impact factor: 22.384

10.  Metainference: A Bayesian inference method for heterogeneous systems.

Authors:  Massimiliano Bonomi; Carlo Camilloni; Andrea Cavalli; Michele Vendruscolo
Journal:  Sci Adv       Date:  2016-01-22       Impact factor: 14.136

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  5 in total

1.  Impact of Glutamate Carboxylation in the Adsorption of the α-1 Domain of Osteocalcin to Hydroxyapatite and Titania.

Authors:  Sarah Alamdari; Jim Pfaendtner
Journal:  Mol Syst Des Eng       Date:  2019-12-09

2.  Developments and Ongoing Challenges for Analysis of Surface-Bound Proteins.

Authors:  Tobias Weidner; David G Castner
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2021-07-27       Impact factor: 12.400

3.  Anisotropy in Stable Conformations of Hydroxylate Ions between the {001} and {110} Planes of TiO2 Rutile Crystals for Glycolate, Lactate, and 2-Hydroxybutyrate Ions Studied by Metadynamics Method.

Authors:  Hiroki Nada; Makoto Kobayashi; Masato Kakihana
Journal:  ACS Omega       Date:  2019-06-25

4.  Role of Water in CaCO3 Biomineralization.

Authors:  Hao Lu; Yu-Chieh Huang; Johannes Hunger; Denis Gebauer; Helmut Cölfen; Mischa Bonn
Journal:  J Am Chem Soc       Date:  2021-01-20       Impact factor: 15.419

5.  Studies of Dynamic Binding of Amino Acids to TiO2 Nanoparticle Surfaces by Solution NMR and Molecular Dynamics Simulations.

Authors:  Mengjun Xue; Janani Sampath; Rachel N Gebhart; Havard J Haugen; S Petter Lyngstadaas; Jim Pfaendtner; Gary Drobny
Journal:  Langmuir       Date:  2020-08-26       Impact factor: 4.331

  5 in total

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