Literature DB >> 21134646

Toward a structure determination method for biomineral-associated protein using combined solid- state NMR and computational structure prediction.

David L Masica1, Jason T Ash, Moise Ndao, Gary P Drobny, Jeffrey J Gray.   

Abstract

Protein-biomineral interactions are paramount to materials production in biology, including the mineral phase of hard tissue. Unfortunately, the structure of biomineral-associated proteins cannot be determined by X-ray crystallography or solution nuclear magnetic resonance (NMR). Here we report a method for determining the structure of biomineral-associated proteins. The method combines solid-state NMR (ssNMR) and ssNMR-biased computational structure prediction. In addition, the algorithm is able to identify lattice geometries most compatible with ssNMR constraints, representing a quantitative, novel method for investigating crystal-face binding specificity. We use this method to determine most of the structure of human salivary statherin interacting with the mineral phase of tooth enamel. Computation and experiment converge on an ensemble of related structures and identify preferential binding at three crystal surfaces. The work represents a significant advance toward determining structure of biomineral-adsorbed protein using experimentally biased structure prediction. This method is generally applicable to proteins that can be chemically synthesized.
Copyright © 2010 Elsevier Ltd. All rights reserved.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 21134646      PMCID: PMC3031250          DOI: 10.1016/j.str.2010.09.013

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  34 in total

1.  Thermodynamics of statherin adsorption onto hydroxyapatite.

Authors:  Rivka Goobes; Gil Goobes; Charles T Campbell; Patrick S Stayton
Journal:  Biochemistry       Date:  2006-05-02       Impact factor: 3.162

2.  Role of molecular charge and hydrophilicity in regulating the kinetics of crystal growth.

Authors:  S Elhadj; J J De Yoreo; J R Hoyer; P M Dove
Journal:  Proc Natl Acad Sci U S A       Date:  2006-12-07       Impact factor: 11.205

3.  Protein structure determination from NMR chemical shifts.

Authors:  Andrea Cavalli; Xavier Salvatella; Christopher M Dobson; Michele Vendruscolo
Journal:  Proc Natl Acad Sci U S A       Date:  2007-05-29       Impact factor: 11.205

4.  Building native protein conformation from NMR backbone chemical shifts using Monte Carlo fragment assembly.

Authors:  Haipeng Gong; Yang Shen; George D Rose
Journal:  Protein Sci       Date:  2007-08       Impact factor: 6.725

5.  Consistent blind protein structure generation from NMR chemical shift data.

Authors:  Yang Shen; Oliver Lange; Frank Delaglio; Paolo Rossi; James M Aramini; Gaohua Liu; Alexander Eletsky; Yibing Wu; Kiran K Singarapu; Alexander Lemak; Alexandr Ignatchenko; Cheryl H Arrowsmith; Thomas Szyperski; Gaetano T Montelione; David Baker; Ad Bax
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-07       Impact factor: 11.205

6.  Solution- and adsorbed-state structural ensembles predicted for the statherin-hydroxyapatite system.

Authors:  David L Masica; Jeffrey J Gray
Journal:  Biophys J       Date:  2009-04-22       Impact factor: 4.033

7.  Structure prediction of protein-solid surface interactions reveals a molecular recognition motif of statherin for hydroxyapatite.

Authors:  Kosta Makrodimitris; David L Masica; Eric T Kim; Jeffrey J Gray
Journal:  J Am Chem Soc       Date:  2007-10-12       Impact factor: 15.419

8.  Inhibition of calcium oxalate crystal growth in vitro by uropontin: another member of the aspartic acid-rich protein superfamily.

Authors:  H Shiraga; W Min; W J VanDusen; M D Clayman; D Miner; C H Terrell; J R Sherbotie; J W Foreman; C Przysiecki; E G Neilson
Journal:  Proc Natl Acad Sci U S A       Date:  1992-01-01       Impact factor: 11.205

9.  Folding of the C-terminal bacterial binding domain in statherin upon adsorption onto hydroxyapatite crystals.

Authors:  Gil Goobes; Rivka Goobes; Ora Schueler-Furman; David Baker; Patrick S Stayton; Gary P Drobny
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-23       Impact factor: 11.205

10.  A (13)C{(31)P} REDOR NMR investigation of the role of glutamic acid residues in statherin- hydroxyapatite recognition.

Authors:  Moise Ndao; Jason T Ash; Nicholas F Breen; Gil Goobes; Patrick S Stayton; Gary P Drobny
Journal:  Langmuir       Date:  2009-10-20       Impact factor: 3.882

View more
  11 in total

1.  Ubiquitin immobilized on mesoporous MCM41 silica surfaces - Analysis by solid-state NMR with biophysical and surface characterization.

Authors:  Nurit Adiram-Filiba; Avital Schremer; Eli Ohaion; Merav Nadav-Tsubery; Tammi Lublin-Tennenbaum; Keren Keinan-Adamsky; Gil Goobes
Journal:  Biointerphases       Date:  2017-05-31       Impact factor: 2.456

2.  Computational reconstruction of multidomain proteins using atomic force microscopy data.

Authors:  Minh-Hieu Trinh; Michael Odorico; Michael E Pique; Jean-Marie Teulon; Victoria A Roberts; Lynn F Ten Eyck; Elizabeth D Getzoff; Pierre Parot; Shu-Wen W Chen; Jean-Luc Pellequer
Journal:  Structure       Date:  2012-01-11       Impact factor: 5.006

3.  Solid-State NMR and MD Study of the Structure of the Statherin Mutant SNa15 on Mineral Surfaces.

Authors:  Erika L Buckle; Arushi Prakash; Massimiliano Bonomi; Janani Sampath; Jim Pfaendtner; Gary P Drobny
Journal:  J Am Chem Soc       Date:  2019-01-24       Impact factor: 15.419

4.  Partial high-resolution structure of phosphorylated and non-phosphorylated leucine-rich amelogenin protein adsorbed to hydroxyapatite.

Authors:  David L Masica; Jeffrey J Gray; Wendy J Shaw
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2011-07-21       Impact factor: 4.126

Review 5.  Solid-state NMR studies of proteins immobilized on inorganic surfaces.

Authors:  Wendy J Shaw
Journal:  Solid State Nucl Magn Reson       Date:  2014-10-29       Impact factor: 2.293

6.  A REDOR ssNMR Investigation of the Role of an N-Terminus Lysine in R5 Silica Recognition.

Authors:  Moise Ndao; Gil Goobes; Prashant S Emani; Gary P Drobny
Journal:  Langmuir       Date:  2016-04-11       Impact factor: 3.882

7.  SFG analysis of surface bound proteins: a route towards structure determination.

Authors:  Tobias Weidner; David G Castner
Journal:  Phys Chem Chem Phys       Date:  2013-08-14       Impact factor: 3.676

8.  Direct observation of phenylalanine orientations in statherin bound to hydroxyapatite surfaces.

Authors:  Tobias Weidner; Manish Dubey; Nicholas F Breen; Jason Ash; J E Baio; Cherno Jaye; Daniel A Fischer; Gary P Drobny; David G Castner
Journal:  J Am Chem Soc       Date:  2012-05-18       Impact factor: 15.419

Review 9.  Using the RosettaSurface algorithm to predict protein structure at mineral surfaces.

Authors:  Michael S Pacella; Da Chen Emily Koo; Robin A Thottungal; Jeffrey J Gray
Journal:  Methods Enzymol       Date:  2013       Impact factor: 1.600

10.  Developments and Ongoing Challenges for Analysis of Surface-Bound Proteins.

Authors:  Tobias Weidner; David G Castner
Journal:  Annu Rev Anal Chem (Palo Alto Calif)       Date:  2021-07-27       Impact factor: 12.400

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.