Literature DB >> 30617184

A stable tetramer is not the only oligomeric state that mitochondrial single-stranded DNA binding proteins can adopt.

Saurabh P Singh1, Vandna Kukshal1, Roberto Galletto2.   

Abstract

Mitochondrial single-stranded DNA (ssDNA)-binding proteins (mtSSBs) are required for mitochondrial DNA replication and stability and are generally assumed to form homotetramers, and this species is proposed to be the one active for ssDNA binding. However, we recently reported that the mtSSB from Saccharomyces cerevisiae (ScRim1) forms homotetramers at high protein concentrations, whereas at low protein concentrations, it dissociates into dimers that bind ssDNA with high affinity. In this work, using a combination of analytical ultracentrifugation techniques and DNA binding experiments with fluorescently labeled DNA oligonucleotides, we tested whether the ability of ScRim1 to form dimers is unique among mtSSBs. Although human mtSSBs and those from Schizosaccharomyces pombe, Xenopus laevis, and Xenopus tropicalis formed stable homotetramers, the mtSSBs from Candida albicans and Candida parapsilosis formed stable homodimers. Moreover, the mtSSBs from Candida nivariensis and Candida castellii formed tetramers at high protein concentrations, whereas at low protein concentrations, they formed dimers, as did ScRim1. Mutational studies revealed that the ability to form either stable tetramers or dimers depended on a complex interplay of more than one amino acid at the dimer-dimer interface and the C-terminal unstructured tail. In conclusion, our findings indicate that mtSSBs can adopt different oligomeric states, ranging from stable tetramers to stable dimers, and suggest that a dimer of mtSSB may be a physiologically relevant species that binds to ssDNA in some yeast species.
© 2019 Singh et al.

Entities:  

Keywords:  DNA replication; DNA-binding protein; analytical ultracentrifugation; biophysics; fluorescence; mitochondria; oligomerization

Mesh:

Substances:

Year:  2019        PMID: 30617184      PMCID: PMC6422086          DOI: 10.1074/jbc.RA118.007048

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  26 in total

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Journal:  Nat Struct Biol       Date:  1997-02

2.  A common core for binding single-stranded DNA: structural comparison of the single-stranded DNA-binding proteins (SSB) from E. coli and human mitochondria.

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Journal:  FEBS Lett       Date:  1997-07-14       Impact factor: 4.124

3.  A dimeric mutant of the homotetrameric single-stranded DNA binding protein from Escherichia coli.

Authors:  Marco Landwehr; Ute Curth; Claus Urbanke
Journal:  Biol Chem       Date:  2002-09       Impact factor: 3.915

4.  Plasmodium falciparum SSB tetramer binds single-stranded DNA only in a fully wrapped mode.

Authors:  Edwin Antony; Alexander G Kozlov; Binh Nguyen; Timothy M Lohman
Journal:  J Mol Biol       Date:  2012-04-26       Impact factor: 5.469

5.  Gene structure and biochemical characterization of mitochondrial single-stranded DNA binding protein from Schizosaccharomyces pombe.

Authors:  Megumi Nishio; Yuichi Seki; Shogo Ikeda
Journal:  DNA Seq       Date:  2006-08

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Authors:  Rahul Roy; Alexander G Kozlov; Timothy M Lohman; Taekjip Ha
Journal:  J Mol Biol       Date:  2007-04-05       Impact factor: 5.469

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Journal:  FEBS Lett       Date:  1998-07-03       Impact factor: 4.124

8.  Investigation of the role of individual tryptophan residues in the binding of Escherichia coli single-stranded DNA binding protein to single-stranded polynucleotides. A study by optical detection of magnetic resonance and site-selected mutagenesis.

Authors:  M I Khamis; J R Casas-Finet; A H Maki; J B Murphy; J W Chase
Journal:  J Biol Chem       Date:  1987-08-15       Impact factor: 5.157

9.  Physical and functional interactions between human mitochondrial single-stranded DNA-binding protein and tumour suppressor p53.

Authors:  Tuck Seng Wong; Sridharan Rajagopalan; Fiona M Townsley; Stefan M Freund; Miriana Petrovich; David Loakes; Alan R Fersht
Journal:  Nucleic Acids Res       Date:  2008-12-09       Impact factor: 16.971

10.  The mitochondrial single-stranded DNA binding protein from S. cerevisiae, Rim1, does not form stable homo-tetramers and binds DNA as a dimer of dimers.

Authors:  Saurabh P Singh; Vandna Kukshal; Paolo De Bona; Edwin Antony; Roberto Galletto
Journal:  Nucleic Acids Res       Date:  2018-08-21       Impact factor: 16.971

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Authors:  Jonathan E Sandoval; Norbert O Reich
Journal:  J Biol Chem       Date:  2019-10-22       Impact factor: 5.157

2.  Mechanisms of SSBP1 variants in mitochondrial disease: Molecular dynamics simulations reveal stable tetramers with altered DNA binding surfaces.

Authors:  Margaret A Gustafson; Lalith Perera; Min Shi; William C Copeland
Journal:  DNA Repair (Amst)       Date:  2021-08-17

3.  The LUFS domain, its transcriptional regulator proteins, and drug resistance in the fungal pathogen Candida auris.

Authors:  Elizabeth Misas; Patricia Escandón; Juan G McEwen; Oliver K Clay
Journal:  Protein Sci       Date:  2019-11       Impact factor: 6.725

  3 in total

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