Literature DB >> 30610903

Next generation sequencing and imprinting disorders: Current applications and future perspectives: Lessons from Silver-Russell syndrome.

Lea Neuheuser1, Robert Meyer1, Matthias Begemann1, Miriam Elbracht1, Thomas Eggermann2.   

Abstract

Imprinting Disorders are a group of rare diseases with overlapping phenotypes which are associated with similar molecular changes and affect imprinted chromosomal regions. Clinical features mainly occur prenatally or in childhood, but have a severe lifelong impact on health. Due to their clinical and molecular heterogeneity, the diagnosis of imprinting disorders is often challenging and requires testing of a broad spectrum of genomic variants and aberrant methylation of imprinted loci (epimutations). A significant number of patients suspicious for imprinting disorders remain without a molecular confirmation, and in these cases differential diagnoses have to be considered. In fact, in patients with clinical features suggestive for imprinting disorders, the precise identification of the molecular cause is relevant for both clinical management as well as for genetic counselling. Thus, a comprehensive testing approach has to be applied. Next generation sequencing (NGS) based studies show that this technique is a valuable tool to improve the diagnostic efficiency particularly in entities with broad differential diagnoses. Furthermore, the development of diverse NGS approaches allows new insights in the function of imprinted regions, their structures, interactions and regulation. Based on a large cohort of patients referred for routine Silver Russel syndrome testing, the appropriateness and limitations of first trial tests in imprinting disorders are demonstrated in this report, but the chances of genomic NGS approaches for diagnostics and research are elucidated as well. Finally, the significance of the precise molecular diagnosis for the personalized management of the patient, and genetic counselling of the family will be discussed.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Imprinting disorders; Longread NGS; Next generation sequencing; Silver-Russell syndrome; Whole exome sequencing; Whole genome sequencing

Mesh:

Year:  2019        PMID: 30610903     DOI: 10.1016/j.mcp.2018.12.007

Source DB:  PubMed          Journal:  Mol Cell Probes        ISSN: 0890-8508            Impact factor:   2.365


  6 in total

Review 1.  Clinical utility of genomic sequencing.

Authors:  Matthew B Neu; Kevin M Bowling; Gregory M Cooper
Journal:  Curr Opin Pediatr       Date:  2019-12       Impact factor: 2.856

2.  One test for all: whole exome sequencing significantly improves the diagnostic yield in growth retarded patients referred for molecular testing for Silver-Russell syndrome.

Authors:  Robert Meyer; Matthias Begemann; Christian Thomas Hübner; Daniela Dey; Alma Kuechler; Magdeldin Elgizouli; Ulrike Schara; Laima Ambrozaityte; Birute Burnyte; Carmen Schröder; Asmaa Kenawy; Peter Kroisel; Stephanie Demuth; Gyorgy Fekete; Thomas Opladen; Miriam Elbracht; Thomas Eggermann
Journal:  Orphanet J Rare Dis       Date:  2021-01-22       Impact factor: 4.123

3.  Pubertal timing in children with Silver Russell syndrome compared to those born small for gestational age.

Authors:  Giuseppa Patti; Federica Malerba; Maria Grazia Calevo; Maurizio Schiavone; Marco Scaglione; Emilio Casalini; Silvia Russo; Daniela Fava; Marta Bassi; Flavia Napoli; Anna Elsa Maria Allegri; Giuseppe D'Annunzio; Roberto Gastaldi; Mohamad Maghnie; Natascia Di Iorgi
Journal:  Front Endocrinol (Lausanne)       Date:  2022-08-24       Impact factor: 6.055

Review 4.  Imprinting disorders in humans: a review.

Authors:  Merlin G Butler
Journal:  Curr Opin Pediatr       Date:  2020-12       Impact factor: 2.856

5.  Contribution of gene mutations to Silver-Russell syndrome phenotype: multigene sequencing analysis in 92 etiology-unknown patients.

Authors:  Takanobu Inoue; Akie Nakamura; Megumi Iwahashi-Odano; Kanako Tanase-Nakao; Keiko Matsubara; Junko Nishioka; Yoshihiro Maruo; Yukihiro Hasegawa; Hiroshi Suzumura; Seiji Sato; Yoshiyuki Kobayashi; Nobuyuki Murakami; Kazuhiko Nakabayashi; Kazuki Yamazawa; Tomoko Fuke; Satoshi Narumi; Akira Oka; Tsutomu Ogata; Maki Fukami; Masayo Kagami
Journal:  Clin Epigenetics       Date:  2020-06-16       Impact factor: 6.551

6.  Screening of patients born small for gestational age with the Silver-Russell syndrome phenotype for DLK1 variants.

Authors:  Aurélie Pham; Marie-Laure Sobrier; Eloïse Giabicani; Marilyne Le Jules Fernandes; Delphine Mitanchez; Fréderic Brioude; Irène Netchine
Journal:  Eur J Hum Genet       Date:  2021-07-19       Impact factor: 4.246

  6 in total

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